RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 HEBP2Q9Y5Z4 205 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 PRSS21Q9Y6M0 314 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 MKRN2OSH3BPM6 223 aa19.9■□□□□ 0.78
SHMT1-209ENST00000582653 ETS1P14921 441 aa19.9■□□□□ 0.78
SHMT1-209ENST00000582653 STIP1P31948 543 aaKnown RBP19.9■□□□□ 0.78
SHMT1-209ENST00000582653 GRIA1P42261 906 aa19.9■□□□□ 0.78
SHMT1-209ENST00000582653 PREPP48147 710 aa19.9■□□□□ 0.78
SHMT1-209ENST00000582653 SNX1Q13596 522 aa19.9■□□□□ 0.78
SHMT1-209ENST00000582653 OASLQ15646 514 aaKnown RBP19.9■□□□□ 0.78
SHMT1-209ENST00000582653 GPR19Q15760 415 aa19.9■□□□□ 0.78
SHMT1-209ENST00000582653 TMTC4Q5T4D3 741 aa19.9■□□□□ 0.78
SHMT1-209ENST00000582653 SEL1L2Q5TEA6 688 aa19.9■□□□□ 0.78
SHMT1-209ENST00000582653 FAM199XQ6PEV8 388 aaPredicted RBP19.9■□□□□ 0.78
SHMT1-209ENST00000582653 COL26A1Q96A83 441 aa19.9■□□□□ 0.78
SHMT1-209ENST00000582653 ZNF501Q96CX3 271 aaPredicted RBP19.9■□□□□ 0.78
SHMT1-209ENST00000582653 ALS2CR12Q96Q35 445 aa19.9■□□□□ 0.78
SHMT1-209ENST00000582653 CDC14CA4D256 554 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 IFNB1P01574 187 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 MSNP26038 577 aaKnown RBP19.89■□□□□ 0.77
SHMT1-209ENST00000582653 FOXK1P85037 733 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 KLRB1Q12918 225 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 IGFBP7Q16270 282 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 COLEC12Q5KU26 742 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 ZNF517Q6ZMY9 492 aaPredicted RBP19.89■□□□□ 0.77
SHMT1-209ENST00000582653 LINC00523Q86TU6 105 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 TMEM135Q86UB9 458 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 SLC13A5Q86YT5 568 aaPredicted RBP19.89■□□□□ 0.77
SHMT1-209ENST00000582653 APLFQ8IW19 511 aaPredicted RBP19.89■□□□□ 0.77
SHMT1-209ENST00000582653 DNAAF3Q8N9W5 541 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 ACVR1CQ8NER5 493 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 LCN9Q8WX39 176 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 RUFY1Q96T51 708 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 SRMSQ9H3Y6 488 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 ACTL8Q9H568 366 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 ZNF148Q9UQR1 794 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 BTRCQ9Y297 605 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 TP53TG5Q9Y2B4 290 aa19.89■□□□□ 0.77
SHMT1-209ENST00000582653 CCDC162PA2VCL2 907 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 SLC9B1P1A6NJY1 282 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 IFRD1O00458 451 aaPredicted RBP19.88■□□□□ 0.77
SHMT1-209ENST00000582653 BTN3A3O00478 584 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 SCRG1O75711 98 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 PSMA3P25788 255 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 PTPN4P29074 926 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 RPS15P62841 145 aaKnown RBP19.88■□□□□ 0.77
SHMT1-209ENST00000582653 PRKAA1Q13131 559 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 PRKG2Q13237 762 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 SEMA5AQ13591 1074 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 BRD3Q15059 726 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 NAPRTQ6XQN6 538 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 GLIS1Q8NBF1 620 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 OR52E1Q8NGJ3 308 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 THAP4Q8WY91 577 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 TSGA10Q9BZW7 698 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 XKR8Q9H6D3 395 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 VPS37BQ9H9H4 285 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 LATS2Q9NRM7 1088 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 C1GALT1Q9NS00 363 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 SOHLH2Q9NX45 425 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 SLC2A6Q9UGQ3 507 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 TLK1Q9UKI8 766 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 POMT2Q9UKY4 750 aa19.88■□□□□ 0.77
SHMT1-209ENST00000582653 FARSAQ9Y285 508 aaKnown RBP19.88■□□□□ 0.77
SHMT1-209ENST00000582653 GSAPA4D1B5 854 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 K7EM74 188 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 MATN2O00339 956 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 BTN3A1O00481 513 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 KRT86O43790 486 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 CPNE3O75131 537 aaKnown RBP19.87■□□□□ 0.77
SHMT1-209ENST00000582653 RFPL1O75677 317 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 CDH3P22223 829 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 FOXN2P32314 431 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 CD151P48509 253 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 LMAN1P49257 510 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 PMS2P54278 862 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 CDH17Q12864 832 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 UGT8Q16880 541 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 PRAMEF17Q5VTA0 474 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 PPP1R21Q6ZMI0 780 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 SYVN1Q86TM6 617 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 TEX19Q8NA77 164 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 SLC38A9Q8NBW4 561 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 OR13J1Q8NGT2 312 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 TFGQ92734 400 aaPredicted RBP19.87■□□□□ 0.77
SHMT1-209ENST00000582653 HDAC10Q969S8 669 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 ZNF778Q96MU6 729 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 LRFN5Q96NI6 719 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 HGH1Q9BTY7 390 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 TLR10Q9BXR5 811 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 TFB2MQ9H5Q4 396 aaKnown RBP19.87■□□□□ 0.77
SHMT1-209ENST00000582653 SYTL2Q9HCH5 934 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 RAB6BQ9NRW1 208 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 MAN2B2Q9Y2E5 1009 aa19.87■□□□□ 0.77
SHMT1-209ENST00000582653 RELNP78509 3460 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 E7EVH7 732 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 SUN1O94901 812 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 AP2A2O94973 939 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 KLK3P07288 261 aaPredicted RBP19.86■□□□□ 0.77
SHMT1-209ENST00000582653 ZSCAN5DPP0CG00 497 aa19.86■□□□□ 0.77
SHMT1-209ENST00000582653 PRDX3P30048 256 aaKnown RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms