RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 LCN8Q6JVE9 175 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 AMIGO2Q86SJ2 522 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 MARVELD2Q8N4S9 558 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 ZNF557Q8N988 423 aaPredicted RBP19.86■□□□□ 0.77
CLN3-230ENST00000568076 TMEM74Q96NL1 305 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 PDP2Q9P2J9 529 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 KLQ9UEF7 1012 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 TRPS1Q9UHF7 1281 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 CNOT11Q9UKZ1 510 aaKnown RBP19.86■□□□□ 0.77
CLN3-230ENST00000568076 AP4B1Q9Y6B7 739 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 AQP12BA6NM10 295 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 ARPC2O15144 300 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 TIPRLO75663 272 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 ARHGEF15O94989 841 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 STAMBPO95630 424 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 EBLN1P0CF75 366 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 ZNF30P17039 623 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 MSH3P20585 1137 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 PAX7P23759 505 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 WEE1P30291 646 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 VIPR1P32241 457 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 HMGCS1Q01581 520 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 PLA2G4EQ3MJ16 856 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 MTX3Q5HYI7 312 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 RNF165Q6ZSG1 346 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 UBE2R2Q712K3 238 aaPredicted RBP19.86■□□□□ 0.77
CLN3-230ENST00000568076 AQP12AQ8IXF9 295 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 EME1Q96AY2 570 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 PPP3R2Q96LZ3 170 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 ALG2Q9H553 416 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 PCDH12Q9NPG4 1184 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 ARMC1Q9NVT9 282 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 ARL15Q9NXU5 204 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 UBAP1Q9NZ09 502 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 ACTR3BQ9P1U1 418 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 PCDHGB4Q9UN71 923 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 PCDHGB5Q9Y5G0 923 aa19.86■□□□□ 0.77
CLN3-230ENST00000568076 EIF3FO00303 357 aaPredicted RBP19.85■□□□□ 0.77
CLN3-230ENST00000568076 NUAK1O60285 661 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 SLC2A4P14672 509 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 TIMP2P16035 220 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 AKT1P31749 480 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 RPL38P63173 70 aaKnown RBP19.85■□□□□ 0.77
CLN3-230ENST00000568076 LIPEQ05469 1076 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 SPATS1Q496A3 300 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 FOXB2Q5VYV0 432 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 NANOGP8Q6NSW7 305 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 Q6ZVL8 140 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 DPP10Q8N608 796 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 SLC12A9Q9BXP2 914 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 FAM83DQ9H4H8 585 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 COQ10BQ9H8M1 238 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 NANOGQ9H9S0 305 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 CCM2LQ9NUG4 571 aaPredicted RBP19.85■□□□□ 0.77
CLN3-230ENST00000568076 SMOXQ9NWM0 555 aa19.85■□□□□ 0.77
CLN3-230ENST00000568076 LINC01553A4QN01 128 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 SOBPA7XYQ1 873 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 SGTAO43765 313 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 XYLBO75191 536 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 TCF3P15923 654 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 SYN1P17600 705 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 GGT5P36269 586 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 ETV3P41162 512 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 KIAA0040Q15053 153 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 C6orf52Q5T4I8 152 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 DLEU7Q6UYE1 221 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 TRIM46Q7Z4K8 759 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 IFNEQ86WN2 208 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 LEMD2Q8NC56 503 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 ASB11Q8WXH4 323 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 OTUB2Q96DC9 234 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 FBXO10Q9UK96 956 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 ZNF490Q9ULM2 529 aaPredicted RBP19.84■□□□□ 0.77
CLN3-230ENST00000568076 USP22Q9UPT9 525 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 C15orf38-AP3S2A0A0A6YYH1 394 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 TSPAN11A1L157 253 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 MANBAO00462 879 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 PER2O15055 1255 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 RGS14O43566 566 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 ULK1O75385 1050 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 WDR47O94967 919 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 HNRNPA1P09651 372 aaKnown RBP eCLIP19.84■□□□□ 0.77
CLN3-230ENST00000568076 CYP2A6P11509 494 aaPredicted RBP19.84■□□□□ 0.77
CLN3-230ENST00000568076 MTHFD1P11586 935 aaKnown RBP19.84■□□□□ 0.77
CLN3-230ENST00000568076 JAK1P23458 1154 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 CHN2P52757 468 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 DGKQP52824 942 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 BOP1Q14137 746 aaKnown RBP19.84■□□□□ 0.77
CLN3-230ENST00000568076 GK3PQ14409 553 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 PTGR1Q14914 329 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 SGO1Q5FBB7 561 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 CDKL4Q5MAI5 379 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 ARPINQ7Z6K5 226 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 PTRH1Q86Y79 214 aaKnown RBP19.84■□□□□ 0.77
CLN3-230ENST00000568076 APLFQ8IW19 511 aaPredicted RBP19.84■□□□□ 0.77
CLN3-230ENST00000568076 USP7Q93009 1102 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 ZNF707Q96C28 371 aaPredicted RBP19.84■□□□□ 0.77
CLN3-230ENST00000568076 SLC2A11Q9BYW1 496 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 SLC32A1Q9H598 525 aa19.84■□□□□ 0.77
CLN3-230ENST00000568076 PARVBQ9HBI1 364 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms