RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 WASH2PQ6VEQ5 465 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 RBM44Q6ZP01 1051 aaKnown RBP16.87■□□□□ 0.29
CLN3-217ENST00000565354 CAPN12Q6ZSI9 719 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 C17orf82Q86X59 251 aaPredicted RBP16.87■□□□□ 0.29
CLN3-217ENST00000565354 SLC38A3Q99624 504 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 FAM117AQ9C073 453 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 WWP1Q9H0M0 922 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 WASH6PQ9NQA3 447 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 FBXO6Q9NRD1 293 aaPredicted RBP16.87■□□□□ 0.29
CLN3-217ENST00000565354 CPNE7Q9UBL6 633 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 DMGDHQ9UI17 866 aaKnown RBP16.87■□□□□ 0.29
CLN3-217ENST00000565354 CRYL1Q9Y2S2 319 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 HEMK1Q9Y5R4 338 aaPredicted RBP16.87■□□□□ 0.29
CLN3-217ENST00000565354 A6NCN8 305 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 H3BMM5 538 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 IFRD1O00458 451 aaPredicted RBP16.86■□□□□ 0.29
CLN3-217ENST00000565354 LIN7AO14910 233 aaPredicted RBP16.86■□□□□ 0.29
CLN3-217ENST00000565354 PNLIPP16233 465 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 RPS3P23396 243 aaKnown RBP eCLIP16.86■□□□□ 0.296e-6■□□□□ 10.6
CLN3-217ENST00000565354 ALDH4A1P30038 563 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 MLLT3P42568 568 aaPredicted RBP16.86■□□□□ 0.29
CLN3-217ENST00000565354 SLC1A2P43004 574 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 FASLGP48023 281 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 CARSP49589 748 aaKnown RBP16.86■□□□□ 0.29
CLN3-217ENST00000565354 SRSF1Q07955 248 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLN3-217ENST00000565354 NFATC3Q12968 1075 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 CLN3Q13286 438 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 KRT33BQ14525 404 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 FASTKD3Q14CZ7 662 aaKnown RBP16.86■□□□□ 0.29
CLN3-217ENST00000565354 ZDHHC24Q6UX98 284 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 CEP128Q6ZU80 1094 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 CLEC14AQ86T13 490 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 DENND6AQ8IWF6 608 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 UNC5BQ8IZJ1 945 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 WDR48Q8TAF3 677 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 GSDMBQ8TAX9 411 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 TMEM159Q96B96 161 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 AHCYL2Q96HN2 611 aaKnown RBP16.86■□□□□ 0.29
CLN3-217ENST00000565354 C12orf66Q96MD2 445 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.86■□□□□ 0.29
CLN3-217ENST00000565354 FAM129AQ9BZQ8 928 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 SARS2Q9NP81 518 aaKnown RBP16.86■□□□□ 0.29
CLN3-217ENST00000565354 IMP3Q9NV31 184 aaKnown RBP16.86■□□□□ 0.29
CLN3-217ENST00000565354 KCNK4Q9NYG8 393 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 SCHIP1Q9P0W5 487 aaPredicted RBP16.86■□□□□ 0.29
CLN3-217ENST00000565354 FBXO5Q9UKT4 447 aa16.86■□□□□ 0.29
CLN3-217ENST00000565354 PMS2P1A4D2B8 440 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 PRR19A6NJB7 356 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 OR52A4PA6NMU1 304 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 E5RI56 91 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 PPM1DO15297 605 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 TCEA3O75764 348 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 ESR1P03372 595 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 RPLP0P05388 317 aaKnown RBP16.85■□□□□ 0.29
CLN3-217ENST00000565354 RHOXF2BP0C7M4 288 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 XRCC1P18887 633 aaPredicted RBP16.85■□□□□ 0.29
CLN3-217ENST00000565354 CSE1LP55060 971 aaKnown RBP16.85■□□□□ 0.29
CLN3-217ENST00000565354 PLOD1Q02809 727 aaPredicted RBP16.85■□□□□ 0.29
CLN3-217ENST00000565354 RPA4Q13156 261 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 SPIDRQ14159 915 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 CLCA4Q14CN2 919 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 STEAP4Q687X5 459 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 FOXR1Q6PIV2 292 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 KRT222Q8N1A0 295 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 LILRA3Q8N6C8 439 aaPredicted RBP16.85■□□□□ 0.29
CLN3-217ENST00000565354 EXD3Q8N9H8 876 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 WDR36Q8NI36 951 aaKnown RBP16.85■□□□□ 0.29
CLN3-217ENST00000565354 SEC14L1Q92503 715 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 LPGAT1Q92604 370 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 CCNL2Q96S94 520 aaPredicted RBP16.85■□□□□ 0.29
CLN3-217ENST00000565354 RHOXF2Q9BQY4 288 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 WDR83Q9BRX9 315 aaKnown RBP16.85■□□□□ 0.29
CLN3-217ENST00000565354 TRIM4Q9C037 500 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 PHACTR1Q9C0D0 580 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 P2RY12Q9H244 342 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 L2HGDHQ9H9P8 463 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 POT1Q9NUX5 634 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 WDR37Q9Y2I8 494 aa16.85■□□□□ 0.29
CLN3-217ENST00000565354 ARHGEF17Q96PE2 2063 aaPredicted RBP16.85■□□□□ 0.29
CLN3-217ENST00000565354 LRRK2Q5S007 2527 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 IQCF5A8MTL0 148 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 KPNA5O15131 536 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 S1PR4O95977 384 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 APOA4P06727 396 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 PKMP14618 531 aaKnown RBP16.84■□□□□ 0.29
CLN3-217ENST00000565354 BRAFP15056 766 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 CHRM3P20309 590 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 SLC19A1P41440 591 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 MAPK9P45984 424 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 GPR3P46089 330 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 PREPP48147 710 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 OR1D5P58170 312 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 CCL7P80098 99 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 MPP1Q00013 466 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 HSPA14Q0VDF9 509 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 RPE65Q16518 533 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 AMZ1Q400G9 498 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 TEX35Q5T0J7 233 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 NAPRTQ6XQN6 538 aa16.84■□□□□ 0.29
CLN3-217ENST00000565354 SPRED1Q7Z699 444 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms