RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CYB5D2Q8WUJ1 264 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 SKA2Q8WVK7 121 aaPredicted RBP7.37□□□□□ -1.23
VPS39-204ENST00000561818 NSMCE3Q96MG7 304 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 OR52B2Q96RD2 323 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 MIPEPQ99797 713 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 APOL5Q9BWW9 433 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 EHD1Q9H4M9 534 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 IPPKQ9H8X2 491 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 ACTR8Q9H981 624 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 WDR41Q9HAD4 459 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 BRF2Q9HAW0 419 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 DNAJC11Q9NVH1 559 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 AIG1Q9NVV5 245 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 NCKAP1Q9Y2A7 1128 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 PCDHGA11Q9Y5H2 935 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 KCNE2Q9Y6J6 123 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 AP1M2Q9Y6Q5 423 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 KIAA1549LQ6ZVL6 1849 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 NOTCH4Q99466 2003 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 A0A1W2PP18 115 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 FAM234BA2RU67 622 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 TRIM38O00635 465 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 MRASO14807 208 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 GMNNO75496 209 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 SLC22A3O75751 556 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 MYO1DO94832 1006 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 DNTTP04053 509 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 HOXC4P09017 264 aaPredicted RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 FCGR1AP12314 374 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 C6P13671 934 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 MYOGP15173 224 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 ARSAP15289 507 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 GNAZP19086 355 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 UGT1A6P19224 532 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 UGT1A1P22309 533 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 UGT1A4P22310 534 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 JAK1P23458 1154 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 CXCR2P25025 360 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 NTSR1P30989 418 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 CCR7P32248 378 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 UGT1A3P35503 534 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 UGT1A5P35504 534 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 VHLP40337 213 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 VIPR2P41587 438 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 GNPDA1P46926 289 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 CDKN1CP49918 316 aaPredicted RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 SLC34A1Q06495 639 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 HSPA14Q0VDF9 509 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 HYAL1Q12794 435 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 GRSF1Q12849 480 aaKnown RBP eCLIP7.36□□□□□ -1.23
VPS39-204ENST00000561818 TMEM115Q12893 351 aaPredicted RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 ABRQ12979 859 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 COL19A1Q14993 1142 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 NR6A1Q15406 480 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 CST6Q15828 149 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 HIST2H2ACQ16777 129 aaPredicted RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 AGKQ53H12 422 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 ACSBG2Q5FVE4 666 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 EOGTQ5NDL2 527 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 SWT1Q5T5J6 900 aaKnown RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 HIST2H2AA3Q6FI13 130 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 RAET1GQ6H3X3 334 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 CAPN13Q6MZZ7 669 aaPredicted RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 PGM2L1Q6PCE3 622 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 RINLQ6ZS11 566 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 Q6ZVL8 140 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 HSD11B1LQ7Z5J1 315 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 PACS2Q86VP3 889 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 RASGRP3Q8IV61 690 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 APLFQ8IW19 511 aaPredicted RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 CHPFQ8IZ52 775 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 DEFB107AQ8IZN7 70 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 DSELQ8IZU8 1212 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 MINDY1Q8N5J2 469 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 ZNF513Q8N8E2 541 aaPredicted RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 L3MBTL4Q8NA19 623 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 FNDC5Q8NAU1 212 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 OR2L2Q8NH16 312 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 MAPK15Q8TD08 544 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 SETD7Q8WTS6 366 aaKnown RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 CXorf40BQ96DE9 158 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 HIC2Q96JB3 615 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 CATSPER2Q96P56 530 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 P2RY13Q9BPV8 354 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 HAUS8Q9BT25 410 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 EFCAB11Q9BUY7 163 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 RIOK2Q9BVS4 552 aaKnown RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 BOCQ9BWV1 1114 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 ABCG8Q9H221 673 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 Q9H521 79 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 ELOVL6Q9H5J4 265 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 WDR55Q9H6Y2 383 aaPredicted RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 RMND5AQ9H871 391 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 NOL11Q9H8H0 719 aaKnown RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 ZNF395Q9H8N7 513 aaPredicted RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 AKTIPQ9H8T0 292 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 EBF2Q9HAK2 575 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 SEMA4BQ9NPR2 832 aaPredicted RBP7.36□□□□□ -1.23
VPS39-204ENST00000561818 HPS4Q9NQG7 708 aa7.36□□□□□ -1.23
VPS39-204ENST00000561818 PHPT1Q9NRX4 125 aaPredicted RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms