RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 ENO2P09104 434 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 VCLP18206 1134 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 ARRB2P32121 409 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 RABIFP47224 123 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 THOP1P52888 689 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 ALDH18A1P54886 795 aaKnown RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 HERVK_113P63132 956 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 RPA4Q13156 261 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 SP140Q13342 867 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 RCN2Q14257 317 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 PYCR3Q53H96 274 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 CFAP157Q5JU67 520 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 ZNF678Q5SXM1 525 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 TPRG1LQ5T0D9 272 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 CGB2Q6NT52 195 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 TLDC1Q6P9B6 456 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 ENPP7Q6UWV6 458 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 ATG14Q6ZNE5 492 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 FAM83HQ6ZRV2 1179 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 Q6ZSR6 202 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 CHST15Q7LFX5 561 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 RASGRP3Q8IV61 690 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 DEFB119Q8N690 84 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 SNX19Q92543 992 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 GRAMD1AQ96CP6 724 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 UHRF1Q96T88 793 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 ELAC2Q9BQ52 826 aaKnown RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 ORAI3Q9BRQ5 295 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 ERVK-6Q9BXR3 956 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 TRIM54Q9BYV2 358 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 DPEP2Q9H4A9 486 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 PARVBQ9HBI1 364 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 PDE10AQ9Y233 779 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 DNAJC16Q9Y2G8 782 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 PRSS38A1L453 326 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 CFAP73A6NFT4 308 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 MGRN1O60291 552 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 PSIP1O75475 530 aaKnown RBP10.97□□□□□ -0.65
USP3-218ENST00000560202 SUPT7LO94864 414 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 SIX3O95343 332 aaPredicted RBP10.97□□□□□ -0.65
USP3-218ENST00000560202 HSPA4LO95757 839 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 GUCA1CO95843 209 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 HIST1H2AGP0C0S8 130 aaPredicted RBP10.97□□□□□ -0.65
USP3-218ENST00000560202 ACP5P13686 325 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 HIST1H2ADP20671 130 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 CYP2A7P20853 494 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 CD27P26842 260 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 HOXA6P31267 233 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 SERPINB5P36952 375 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 MAPK9P45984 424 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 GNPDA1P46926 289 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 RPIAP49247 311 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 RPL6Q02878 288 aaKnown RBP10.97□□□□□ -0.65
USP3-218ENST00000560202 DMPKQ09013 629 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 DMWDQ09019 674 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 OVGP1Q12889 678 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 SETDB1Q15047 1291 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 UNC50Q53HI1 259 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 ARL13AQ5H913 290 aaPredicted RBP10.97□□□□□ -0.65
USP3-218ENST00000560202 METRNLQ641Q3 311 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 TSSK4Q6SA08 328 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 SLC36A4Q6YBV0 504 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 PIGWQ7Z7B1 504 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 CRLF3Q8IUI8 442 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 APLFQ8IW19 511 aaPredicted RBP10.97□□□□□ -0.65
USP3-218ENST00000560202 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.97□□□□□ -0.65
USP3-218ENST00000560202 PDPRQ8NCN5 879 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 OR13H1Q8NG92 308 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 CFAP61Q8NHU2 1237 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 PPP4R1Q8TF05 950 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 OR1E3Q8WZA6 343 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 HIST1H2AHQ96KK5 128 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 CNDP1Q96KN2 507 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 FOPNLQ96NB1 174 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 SORT1Q99523 831 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 HIST1H2AJQ99878 128 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 EGFL8Q99944 293 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 TIMM29Q9BSF4 260 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 H2AFJQ9BTM1 129 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 OR52A5Q9H2C5 316 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 CARS2Q9HA77 564 aaKnown RBP10.97□□□□□ -0.65
USP3-218ENST00000560202 GPSM3Q9Y4H4 160 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 VCANP13611 3396 aa10.97□□□□□ -0.65
USP3-218ENST00000560202 CCDC163A0A0D9SF12 145 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 PABPN1LA6NDY0 278 aaKnown RBP10.96□□□□□ -0.65
USP3-218ENST00000560202 TMEM221A6NGB7 291 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 LRRC14BA6NHZ5 514 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 M0R296 226 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 TNFRSF10CO14798 259 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 MAP3K13O43283 966 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 SNX3O60493 162 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 KCNJ13O60928 360 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 TGDSO95455 350 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 CHRNGP07510 517 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 EEF1DP29692 281 aaKnown RBP10.96□□□□□ -0.65
USP3-218ENST00000560202 CCR10P46092 362 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 AGTR2P50052 363 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 CLNS1AP54105 237 aaKnown RBP10.96□□□□□ -0.65
USP3-218ENST00000560202 CDKL1Q00532 357 aa10.96□□□□□ -0.65
USP3-218ENST00000560202 SF3A3Q12874 501 aaKnown RBP eCLIP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms