RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SFRP1Q8N474 314 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 ARL14EPQ8N8R7 260 aaPredicted RBP7.14□□□□□ -1.27
VPS13C-206ENST00000558338 TET1Q8NFU7 2136 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 TSPAN14Q8NG11 270 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 OR4F6Q8NGB9 312 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 OR52B6Q8NGF0 335 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 FIBINQ8TAL6 211 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 DNAJB14Q8TBM8 379 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 DTNBP1Q96EV8 351 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 LRCH3Q96II8 777 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 NSMCE2Q96MF7 247 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 TOX2Q96NM4 488 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 SMIM14Q96QK8 99 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 SH3GL1Q99961 368 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 C1orf50Q9BV19 199 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 TM6SF2Q9BZW4 377 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 CD244Q9BZW8 370 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 IPPKQ9H8X2 491 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 CLK4Q9HAZ1 481 aaKnown RBP7.14□□□□□ -1.27
VPS13C-206ENST00000558338 EVLQ9UI08 416 aaPredicted RBP7.14□□□□□ -1.27
VPS13C-206ENST00000558338 BPTFQ12830 3046 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 ABHD14A-ACY1A0A1B0GW23 586 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 TCRBV5S2A0A599 114 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 IQCF5A8MTL0 148 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 GAPDHSO14556 408 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 OR7A17O14581 309 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 TSPAN6O43657 245 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 GREM1O60565 184 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 TRIM16O95361 564 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 LRG1P02750 347 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CKMP06732 381 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ANXA5P08758 320 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CDH1P12830 882 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 MYF6P23409 242 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 NFKBIAP25963 317 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 AKT1P31749 480 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 HNF1BP35680 557 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CASP2P42575 452 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CCT8P50990 548 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 LSAMPQ13449 338 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 IMPG1Q17R60 797 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 SLC5A9Q2M3M2 681 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 AP5B1Q2VPB7 878 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 EML3Q32P44 896 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 NHSL2Q5HYW2 709 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 PAGE3Q5JUK9 113 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 GPRC6AQ5T6X5 926 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 NANOGP8Q6NSW7 305 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 RBM44Q6ZP01 1051 aaKnown RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 Q6ZSR9 355 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 TPRG1Q6ZUI0 275 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CCDC149Q6ZUS6 474 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 LRRC70Q7Z2Q7 622 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 SPRED1Q7Z699 444 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 NXPE1Q8N323 547 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 TRIML2Q8N7C3 387 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 OR2AP1Q8NGE2 309 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 PROKR1Q8TCW9 393 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 TFAP2CQ92754 450 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 VPS33AQ96AX1 596 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF689Q96CS4 500 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CRELD1Q96HD1 420 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CCDC115Q96NT0 180 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ACOX2Q99424 681 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 BDH2Q9BUT1 245 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ADI1Q9BV57 179 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 NTMT1Q9BV86 223 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 GRIP2Q9C0E4 1043 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CEP44Q9C0F1 390 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 NANOGQ9H9S0 305 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 IL21Q9HBE4 155 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF334Q9HCZ1 680 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 PAK6Q9NQU5 681 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ZDHHC3Q9NYG2 299 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 SLC25A13Q9UJS0 675 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 OGDHLQ9ULD0 1010 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 POLR3HQ9Y535 204 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 A0A087WXM4 84 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 RNF103-CHMP3A0A140T963 221 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 FAM221BA6H8Z2 402 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CCDC160A6NGH7 325 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 SAC3D1A6NKF1 404 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 AGAP14A8MT82 685 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 C9JVG2 144 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 SOCS2O14508 198 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 KPNA5O15131 536 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 DEAF1O75398 565 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 BMP10O95393 424 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 KRT6AP02538 564 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 KRT6BP04259 564 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 IL6P05231 212 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 C8GP07360 202 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ANXA6P08133 673 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 OR56A5P0C7T3 313 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ATP6V1B1P15313 513 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 EPB42P16452 691 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 BPIP17213 487 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 GABRR2P28476 465 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 GNPDA1P46926 289 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 KRT6CP48668 564 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms