RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 B3GNT4Q9C0J1 378 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 P2RY12Q9H244 342 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 ZNF768Q9H5H4 540 aaKnown RBP13.36□□□□□ -0.27
SHMT2-219ENST00000555563 MVB12BQ9H7P6 319 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 RNF14Q9UBS8 474 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 GNPTGQ9UJJ9 305 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 B3GALT1Q9Y5Z6 326 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 MAD1L1Q9Y6D9 718 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 RPS6KL1Q9Y6S9 549 aa13.36□□□□□ -0.27
SHMT2-219ENST00000555563 ZCWPW2A0A1B0GU75 182 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 UBA6A0AVT1 1052 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-219ENST00000555563 OR6C74A6NCV1 312 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 TTI1O43156 1089 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 F7P08709 466 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-219ENST00000555563 LIPCP11150 499 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 OGNP20774 298 aaKnown RBP13.35□□□□□ -0.27
SHMT2-219ENST00000555563 CD82P27701 267 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 ACADLP28330 430 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 SEPHS1P49903 392 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 RAB15P59190 212 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 ETF1P62495 437 aaKnown RBP13.35□□□□□ -0.27
SHMT2-219ENST00000555563 MC2RQ01718 297 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 TGIF1Q15583 401 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 CTSL3PQ5NE16 218 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 DNTTIP2Q5QJE6 756 aaKnown RBP13.35□□□□□ -0.27
SHMT2-219ENST00000555563 RNF187Q5TA31 235 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-219ENST00000555563 ZNF470Q6ECI4 717 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 TMEM135Q86UB9 458 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 HOOK3Q86VS8 718 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 LRRC6Q86X45 466 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 VRK3Q8IV63 474 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 SLC22A15Q8IZD6 547 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 OR4E2Q8NGC2 313 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 OR52E1Q8NGJ3 308 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 OR5AR1Q8NGP9 310 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 LCN9Q8WX39 176 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 LPGAT1Q92604 370 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 STAMBPL1Q96FJ0 436 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 SIGLEC10Q96LC7 697 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 NRTNQ99748 197 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 CTRCQ99895 268 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 CARD6Q9BX69 1037 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 APMAPQ9HDC9 416 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 HRASLS2Q9NWW9 162 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.35□□□□□ -0.27
SHMT2-219ENST00000555563 CDYLQ9Y232 598 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 ASF1AQ9Y294 204 aa13.35□□□□□ -0.27
SHMT2-219ENST00000555563 ANKRD11Q6UB99 2663 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-219ENST00000555563 LOC400499M0QZD8 3231 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 SDK2Q58EX2 2172 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 MAGEB16A2A368 324 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 TLCD2A6NGC4 264 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 BANF1O75531 89 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 USP1O94782 785 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 APOA4P06727 396 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 AOAHP28039 575 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 CASQ1P31415 396 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 KPNA2P52292 529 aaKnown RBP13.34□□□□□ -0.27
SHMT2-219ENST00000555563 SH3BP2P78314 561 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 PLOD1Q02809 727 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-219ENST00000555563 HSPA14Q0VDF9 509 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 PRKG2Q13237 762 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 TMED2Q15363 201 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 DCAF12Q5T6F0 453 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 BROXQ5VW32 411 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 NEPROQ6NW34 567 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 ARMC6Q6NXE6 501 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 SYT10Q6XYQ8 523 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 CENPUQ71F23 418 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 PCGF5Q86SE9 256 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 SDCCAG8Q86SQ7 713 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-219ENST00000555563 CILP2Q8IUL8 1156 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 KLHL6Q8WZ60 621 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 BIRC8Q96P09 236 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 PANX3Q96QZ0 392 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 CD180Q99467 661 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 MAP3K3Q99759 626 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 ASPSCR1Q9BZE9 553 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 SRMSQ9H3Y6 488 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 XKR8Q9H6D3 395 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 WDR70Q9NW82 654 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 SEMA5BQ9P283 1151 aa13.34□□□□□ -0.27
SHMT2-219ENST00000555563 IGHV5-51A0A0C4DH38 117 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-219ENST00000555563 STMND1H3BQB6 276 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 BTN3A1O00481 513 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 NIPSNAP2O75323 286 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 GPC4O75487 556 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 NELFEP18615 380 aaKnown RBP13.33□□□□□ -0.28
SHMT2-219ENST00000555563 PGAM1P18669 254 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 POLR2CP19387 275 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-219ENST00000555563 FMO4P31512 558 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 SLC1A2P43004 574 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 TMPRSS3P57727 454 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 FOXM1Q08050 763 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 DHX9Q08211 1270 aaKnown RBP13.33□□□□□ -0.28
SHMT2-219ENST00000555563 MORF4L2Q15014 288 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 MSS51Q4VC12 460 aa13.33□□□□□ -0.28
SHMT2-219ENST00000555563 DNAJC21Q5F1R6 531 aaKnown RBP13.33□□□□□ -0.28
SHMT2-219ENST00000555563 DTX1Q86Y01 620 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms