RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 KATNA1O75449 491 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 B3GALT4O96024 378 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 PRLP01236 227 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 C1QCP02747 245 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 FGF1P05230 155 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 BMP4P12644 408 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ITIH1P19827 911 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 HLA-DPA1P20036 260 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TGM1P22735 817 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 HOXC8P31273 242 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 GRK4P32298 578 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 RPL9P32969 192 aaKnown RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 DCTP40126 519 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 PBX3P40426 434 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 MAP2K4P45985 399 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 GABARAPL2P60520 117 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 EPS8Q12929 822 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 PWP1Q13610 501 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF846Q147U1 533 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ABRAXAS2Q15018 415 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CCL14Q16627 93 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 SLC39A12Q504Y0 691 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 LDLRAD1Q5T700 205 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TMEM236Q5W0B7 351 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 IL27RAQ6UWB1 636 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 LINC00299Q6ZSB3 139 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 FKBP9P1Q75LS8 142 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 NECAB2Q7Z6G3 386 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 DSG4Q86SJ6 1040 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 SLCO6A1Q86UG4 719 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ANKRD13BQ86YJ7 626 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 MIB1Q86YT6 1006 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 SPATA2LQ8IUW3 424 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 PHACTR4Q8IZ21 702 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TTC16Q8NEE8 873 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 OR2T12Q8NG77 320 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 OR56A4Q8NGH8 313 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CD200R1Q8TD46 325 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 GTF3C2Q8WUA4 911 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 BRI3BPQ8WY22 251 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 GTF2H4Q92759 462 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 LINGO1Q96FE5 620 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF641Q96N77 438 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 C17orf80Q9BSJ5 609 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 POLR1EQ9GZS1 481 aaKnown RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 GORASP2Q9H8Y8 452 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ACTR8Q9H981 624 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 POLE4Q9NR33 117 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 NLE1Q9NVX2 485 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 COMMD8Q9NX08 183 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ABI2Q9NYB9 513 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 MTRRQ9UBK8 725 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 DNAJB9Q9UBS3 223 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 LIMD1Q9UGP4 676 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CCL27Q9Y4X3 112 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 PLXNA3P51805 1871 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 SYCE1LA8MT33 242 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 AREL1O15033 823 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GPR182O15218 404 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 HS6ST1O60243 411 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 PRAMEF11O60813 436 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 SOAT2O75908 522 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 MLYCDO95822 493 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 BMP1P13497 986 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 OR1E1P30953 314 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 FMO3P31513 532 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 MASP1P48740 699 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 VBP1P61758 197 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 NCS1P62166 190 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 MRPS6P82932 125 aaKnown RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 OCA2Q04671 838 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 TRIM32Q13049 653 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CDK5R2Q13319 367 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 RAPSNQ13702 412 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 PON2Q15165 354 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 NR6A1Q15406 480 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 AP5B1Q2VPB7 878 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 PGS1Q32NB8 556 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CATSPEREQ5SY80 951 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF691Q5VV52 312 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 NADSYN1Q6IA69 706 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 TMEM53Q6P2H8 277 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CYP4Z1Q86W10 505 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 METTL23Q86XA0 190 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GPSM1Q86YR5 675 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 DCP2Q8IU60 420 aaKnown RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CFAP52Q8N1V2 620 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 TTC30BQ8N4P2 665 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 AADATQ8N5Z0 425 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 KRTCAP2Q8N6L1 136 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 OR4F6Q8NGB9 312 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 METTL6Q8TCB7 284 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 RPL3LQ92901 407 aaKnown RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 SLC47A1Q96FL8 570 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CCDC138Q96M89 665 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CCDC115Q96NT0 180 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 NODALQ96S42 347 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF382Q96SR6 550 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 YIPF2Q9BWQ6 316 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CCDC90BQ9GZT6 254 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms