RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 COILP38432 576 aaPredicted RBP20.06■□□□□ 0.8
VPS28-206ENST00000526734 PREPP48147 710 aa20.06■□□□□ 0.8
VPS28-206ENST00000526734 FNTAP49354 379 aa20.06■□□□□ 0.8
VPS28-206ENST00000526734 HSD11B2P80365 405 aa20.06■□□□□ 0.8
VPS28-206ENST00000526734 GPS1Q13098 491 aa20.06■□□□□ 0.8
VPS28-206ENST00000526734 SDK2Q58EX2 2172 aa20.06■□□□□ 0.8
VPS28-206ENST00000526734 CCDC137Q6PK04 289 aaKnown RBP20.06■□□□□ 0.8
VPS28-206ENST00000526734 OR8K5Q8NH50 307 aa20.06■□□□□ 0.8
VPS28-206ENST00000526734 MAP3K3Q99759 626 aa20.06■□□□□ 0.8
VPS28-206ENST00000526734 CARD6Q9BX69 1037 aa20.06■□□□□ 0.8
VPS28-206ENST00000526734 ULBP3Q9BZM4 244 aa20.06■□□□□ 0.8
VPS28-206ENST00000526734 POMT2Q9UKY4 750 aa20.06■□□□□ 0.8
VPS28-206ENST00000526734 SNX12Q9UMY4 172 aa20.06■□□□□ 0.8
VPS28-206ENST00000526734 IGHV5-51A0A0C4DH38 117 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 PRMT5O14744 637 aaPredicted RBP20.05■□□□□ 0.8
VPS28-206ENST00000526734 CD3EAPO15446 510 aaKnown RBP20.05■□□□□ 0.8
VPS28-206ENST00000526734 MT-ND3P03897 115 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 MGAT1P26572 445 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 PPP1CAP62136 330 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 SH3BP2P78314 561 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 TUBB3Q13509 450 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 TMED2Q15363 201 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 TMTC4Q5T4D3 741 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 TTC27Q6P3X3 843 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 RASGRP3Q8IV61 690 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 TBC1D21Q8IYX1 336 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 D2HGDHQ8N465 521 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 OR4E2Q8NGC2 313 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 OR52E1Q8NGJ3 308 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 PANX3Q96QZ0 392 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 AP1M1Q9BXS5 423 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 KCNF1Q9H3M0 494 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 XAB2Q9HCS7 855 aaKnown RBP20.05■□□□□ 0.8
VPS28-206ENST00000526734 C1GALT1Q9NS00 363 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 RARRES3Q9UL19 164 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 SOX13Q9UN79 622 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 ASF1AQ9Y294 204 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 BTRCQ9Y297 605 aa20.05■□□□□ 0.8
VPS28-206ENST00000526734 KPNA5O15131 536 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 OR1I1O60431 355 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 PHF2O75151 1096 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 APOA4P06727 396 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 TCP1P17987 556 aaKnown RBP20.04■□□□□ 0.8
VPS28-206ENST00000526734 PAMP19021 973 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 ACADLP28330 430 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 SHMT2P34897 504 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 TRIP13Q15645 432 aaPredicted RBP20.04■□□□□ 0.8
VPS28-206ENST00000526734 DNAJC21Q5F1R6 531 aaKnown RBP20.04■□□□□ 0.8
VPS28-206ENST00000526734 RNF187Q5TA31 235 aaPredicted RBP20.04■□□□□ 0.8
VPS28-206ENST00000526734 KIAA1614Q5VZ46 1190 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 MRNIPQ6NTE8 343 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 MICALCLQ6ZW33 695 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 SDCCAG8Q86SQ7 713 aaPredicted RBP20.04■□□□□ 0.8
VPS28-206ENST00000526734 AMIGO1Q86WK6 493 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 MCUQ8NE86 351 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 ASZ1Q8WWH4 475 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 MS4A14Q96JA4 679 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 SLC45A3Q96JT2 553 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 PDLIM2Q96JY6 352 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 HGH1Q9BTY7 390 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 GPN2Q9H9Y4 310 aaPredicted RBP20.04■□□□□ 0.8
VPS28-206ENST00000526734 SYTL2Q9HCH5 934 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 SYBUQ9NX95 663 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 GNPTGQ9UJJ9 305 aa20.04■□□□□ 0.8
VPS28-206ENST00000526734 MAGEB16A2A368 324 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 ZNF891A8MT65 544 aaPredicted RBP20.03■□□□□ 0.8
VPS28-206ENST00000526734 C2orf74A8MZ97 194 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 MAP3K7O43318 606 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 NDUFS3O75489 264 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 RPN2P04844 631 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 LIFP15018 202 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 POLR2CP19387 275 aaPredicted RBP20.03■□□□□ 0.8
VPS28-206ENST00000526734 RPS3P23396 243 aaKnown RBP eCLIP20.03■□□□□ 0.86e-10■■■□□ 17.2
VPS28-206ENST00000526734 STAT5AP42229 794 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 VPS41P49754 854 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 KPNA2P52292 529 aaKnown RBP20.03■□□□□ 0.8
VPS28-206ENST00000526734 CRADDP78560 199 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 MC1RQ01726 317 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 SRSF6Q13247 344 aaKnown RBP20.03■□□□□ 0.8
VPS28-206ENST00000526734 SEMA3AQ14563 771 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 KIAA0930Q6ICG6 404 aaPredicted RBP20.03■□□□□ 0.8
VPS28-206ENST00000526734 C6orf15Q6UXA7 325 aaPredicted RBP20.03■□□□□ 0.8
VPS28-206ENST00000526734 SLC22A15Q8IZD6 547 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 OR5K2Q8NHB8 316 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 TCF12Q99081 682 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 LATS2Q9NRM7 1088 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 FGF21Q9NSA1 209 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 SAMD15Q9P1V8 674 aa20.03■□□□□ 0.8
VPS28-206ENST00000526734 GSAPA4D1B5 854 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 SPAG6O75602 509 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 CDH3P22223 829 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 NMBRP28336 390 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 TUBB4BP68371 445 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 TUBB2AQ13885 445 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 CRTC2Q53ET0 693 aaPredicted RBP20.02■□□□□ 0.8
VPS28-206ENST00000526734 PTRHD1Q6GMV3 140 aaKnown RBP20.02■□□□□ 0.8
VPS28-206ENST00000526734 PCSK4Q6UW60 755 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 TIPARPQ7Z3E1 657 aaKnown RBP20.02■□□□□ 0.8
VPS28-206ENST00000526734 PHC3Q8NDX5 983 aa20.02■□□□□ 0.8
VPS28-206ENST00000526734 COG1Q8WTW3 980 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms