RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 KLHL26Q53HC5 615 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ARL13AQ5H913 290 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 IL23RQ5VWK5 629 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 FAM198BQ6UWH4 519 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ASB18Q6ZVZ8 466 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF367Q7RTV3 350 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 TNS4Q8IZW8 715 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC13A3Q8WWT9 602 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 TNFRSF25Q93038 417 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ARL11Q969Q4 196 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 C3orf49Q96BT1 292 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 PCDHB18PQ96TA0 734 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 TMEM134Q9H6X4 195 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 SPG21Q9NZD8 308 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 CNOT6Q9ULM6 557 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 RUVBL1Q9Y265 456 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF701M0R085 212 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ACKR2O00590 384 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 DNAJB6O75190 326 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 STK16O75716 305 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 CLCN4P51793 760 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 CAV3P56539 151 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 RHDQ02161 417 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 MAD2L1BPQ15013 274 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 NKX1-1Q15270 411 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 TGFBIQ15582 683 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF529Q6P280 563 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 OR10G2Q8NGC3 310 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 C5orf34Q96MH7 638 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 COL15A1P39059 1388 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 LRRTM2O43300 516 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 FAM189A1O60320 539 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 PCDH8O95206 1070 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 PKMP14618 531 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 CXCR3P49682 368 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 SMSP52788 366 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 CDK10Q15131 360 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ERMP1Q7Z2K6 904 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 FAM35AQ86V20 835 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 C17orf64Q86WR6 236 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 HID1Q8IV36 788 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 COQ8AQ8NI60 647 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF563Q8TA94 476 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 C10orf82Q8WW14 230 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC7A6OSQ96CW6 309 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 MAELQ96JY0 434 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 SH2D3AQ9BRG2 576 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 NDC1Q9BTX1 674 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 TUBB1Q9H4B7 451 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ACTR3BQ9P1U1 418 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 CNTN6Q9UQ52 1028 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 EME2A4GXA9 379 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 SPTLC1O15269 473 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ATG13O75143 517 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ERAL1O75616 437 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 C22orf31O95567 290 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 CFL1P23528 166 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 RBMXP38159 391 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ENTPD1P49961 510 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 HES5Q5TA89 166 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 TMEM214Q6NUQ4 689 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 COPS5Q92905 334 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 PARK7Q99497 189 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 SNRNP25Q9BV90 132 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 PRDM12Q9H4Q4 367 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 THG1LQ9NWX6 298 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 SNTG2Q9NY99 539 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 COL20A1Q9P218 1284 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ADAMTS12P58397 1594 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 J3QRK9 145 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ACADMP11310 421 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC12A3P55017 1021 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 FGL2Q14314 439 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 DNM1P34Q6PK57 102 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ANKS1BQ7Z6G8 1248 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ZFPM1Q8IX07 1006 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 TSPEARQ8WU66 669 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 ZUFSPQ96AP4 578 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 FBXL8Q96CD0 374 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 MECRQ9BV79 373 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 CIPCQ9C0C6 399 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 RSPH9Q9H1X1 276 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 WASF3Q9UPY6 502 aa11.06□□□□□ -0.64
LIMCH1-217ENST00000512946 FAM149AA5PLN7 773 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 RHPN2P1A8MT19 583 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 AIPO00170 330 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 NARSO43776 548 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 IFNA5P01569 189 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 VARSP26640 1264 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 SSR2P43308 183 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 GPR162Q16538 588 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 MPPE1Q53F39 396 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 CEP97Q8IW35 865 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 LGI2Q8N0V4 545 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 UBE2J2Q8N2K1 259 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 SPOCK2Q92563 424 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 TAPBPLQ9BX59 468 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 TAS2R8Q9NYW2 309 aa11.05□□□□□ -0.64
LIMCH1-217ENST00000512946 ASB4Q9Y574 426 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms