RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 F8W036 122 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 SCAMP3O14828 347 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 C4BPAP04003 597 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 ITGB3P05106 788 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 HMGN1P05114 100 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 RAP2AP10114 183 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 CSKP41240 450 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 GBX2P52951 348 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 DSC1Q08554 894 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 ABRQ12979 859 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 RPA4Q13156 261 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 MAB21L1Q13394 359 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 PIWIL4Q7Z3Z4 852 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 RIMKLAQ8IXN7 391 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 MIER2Q8N344 545 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 KCTD17Q8N5Z5 321 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 OR6M1Q8NGM8 313 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 APOL2Q9BQE5 337 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 ADPGKQ9BRR6 497 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 CYTH4Q9UIA0 394 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 BBIP1A8MTZ0 92 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 HOXD8P13378 290 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 PCSK2P16519 638 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 RAB3AP20336 220 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 TRIM23P36406 574 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 KIR2DL3P43628 341 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 GSTO1P78417 241 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 HYAL2Q12891 473 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 XKR9Q5GH70 373 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 ANKRD54Q6NXT1 300 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 TMPRSS11AQ6ZMR5 421 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 ZNF431Q8TF32 576 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 MYOCQ99972 504 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 TSEN34Q9BSV6 310 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 TEKT3Q9BXF9 490 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 MAGEB5Q9BZ81 275 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 TINAGL1Q9GZM7 467 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 LRRC4Q9HBW1 653 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 EXOSC4Q9NPD3 245 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 DYRK4Q9NR20 520 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 BAIAP2Q9UQB8 552 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 CSADQ9Y600 493 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 OAS3Q9Y6K5 1087 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 WASHC1A8K0Z3 465 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 ADAM11O75078 769 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 RFPL3O75679 317 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 CYP19A1P11511 503 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 PDGFRAP16234 1089 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 CHRNA5P30532 468 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 EPHA5P54756 1037 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 GPR19Q15760 415 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 PAGE3Q5JUK9 113 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 ERICH5Q6P6B1 374 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 C17orf107Q6ZR85 190 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 C2orf69Q8N8R5 385 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 TMEM161BQ8NDZ6 487 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 LPAR1Q92633 364 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 ZNF668Q96K58 619 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 TNIP3Q96KP6 325 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 LGMNQ99538 433 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 CNPY3Q9BT09 278 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 LIMD1Q9UGP4 676 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 PCDHB5Q9Y5E4 795 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 GMPPBQ9Y5P6 360 aa11.85□□□□□ -0.51
LIMCH1-213ENST00000511496 USP54Q70EL1 1684 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 M0R082 166 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 KIAA0513O60268 411 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 DFNA5O60443 496 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 PAPSS2O95340 614 aaPredicted RBP11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 ALDH1A1P00352 501 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 DMP1Q13316 513 aaPredicted RBP11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 GRB7Q14451 532 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 SPDYE7PQ495Y7 208 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 SMYD5Q6GMV2 418 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 ENPP6Q6UWR7 440 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 HDDC2Q7Z4H3 204 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 TMEM179BQ7Z7N9 219 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 LIX1LQ8IVB5 337 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 CCDC36Q8IYA8 594 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 CENPLQ8N0S6 344 aaPredicted RBP11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 C9orf62Q8N4C0 152 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 OR5B17Q8NGF7 314 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 OR10Q1Q8NGQ4 319 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 CELF6Q96J87 481 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 SLC9A7Q96T83 725 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 SLC6A15Q9H2J7 730 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 ELF5Q9UKW6 265 aaPredicted RBP11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 PPP6CO00743 305 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 FABP7O15540 132 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 SUPT7LO94864 414 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 LSM8O95777 96 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 HPRP00739 348 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 AHSGP02765 367 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 MAPTP10636 758 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 TPH1P17752 444 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 PFKLP17858 780 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 PSMB4P28070 264 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 SSTR2P30874 369 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 SSTR4P31391 388 aa11.84□□□□□ -0.51
LIMCH1-213ENST00000511496 NUP62P37198 522 aaPredicted RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms