RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CPED1A4D0V7 1026 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 PP2D1A8MPX8 630 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 TISP43B9A030 160 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 ANKRD63C9JTQ0 380 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 H7C1Q1 480 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 CES2O00748 559 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 RNASEH1O60930 286 aaKnown RBP3.97□□□□□ -1.77
USP54-217ENST00000498213 SRGAP2O75044 1071 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 GCATO75600 419 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 TUSC2O75896 110 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 VNN1O95497 513 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 TUBB4AP04350 444 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 GP1BAP07359 652 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 CISD3P0C7P0 127 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 FAM200BP0CF97 657 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 TNNI1P19237 187 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 STAT6P42226 847 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 MMP13P45452 471 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 RXRGP48443 463 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 CCR5P51681 352 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 AGFG1P52594 562 aaKnown RBP3.97□□□□□ -1.77
USP54-217ENST00000498213 ARFIP2P53365 341 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 CDH8P55286 799 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 SULT2A1Q06520 285 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 SPAG1Q07617 926 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 SLC12A1Q13621 1099 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 CCNIQ14094 377 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 SLC39A14Q15043 492 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 ZRSR1Q15695 479 aaKnown RBP3.97□□□□□ -1.77
USP54-217ENST00000498213 MEA1Q16626 185 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 KNOP1Q1ED39 458 aaKnown RBP3.97□□□□□ -1.77
USP54-217ENST00000498213 ZIK1Q3SY52 487 aaPredicted RBP3.97□□□□□ -1.77
USP54-217ENST00000498213 ZACNQ401N2 412 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 MPPE1Q53F39 396 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 MORN5Q5VZ52 161 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 DENND2CQ68D51 928 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 SLC9A4Q6AI14 798 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 SLC18B1Q6NT16 456 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 NEK5Q6P3R8 708 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 ZNF66Q6ZN08 573 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 DPY19L3Q6ZPD9 716 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 INTS8Q75QN2 995 aaKnown RBP3.97□□□□□ -1.77
USP54-217ENST00000498213 OVCH2Q7RTZ1 564 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 CHSY1Q86X52 802 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 SFR1Q86XK3 245 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 UNC45BQ8IWX7 931 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 NAGSQ8N159 534 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 SLC25A45Q8N413 288 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 FBXO39Q8N4B4 442 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 SCARB1Q8WTV0 552 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 RPL36ALQ969Q0 106 aaKnown RBP3.97□□□□□ -1.77
USP54-217ENST00000498213 SPSB4Q96A44 273 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 BBS2Q9BXC9 721 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 C1QTNF7Q9BXJ2 289 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 TRIM9Q9C026 710 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 BTBD1Q9H0C5 482 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 ZHX3Q9H4I2 956 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 SYNDIG1Q9H7V2 258 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 PDE11AQ9HCR9 933 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 AGPAT3Q9NRZ7 376 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 PANK4Q9NVE7 773 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 DNAJC17Q9NVM6 304 aaKnown RBP3.97□□□□□ -1.77
USP54-217ENST00000498213 AMFRQ9UKV5 643 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 NCKAP1Q9Y2A7 1128 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 TBC1D30Q9Y2I9 924 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 STON1Q9Y6Q2 735 aa3.97□□□□□ -1.77
USP54-217ENST00000498213 MYO18AQ92614 2054 aaKnown RBP3.97□□□□□ -1.77
USP54-217ENST00000498213 TRIP11Q15643 1979 aa3.96□□□□□ -1.77
USP54-217ENST00000498213 CCDC187A0A096LP49 1063 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 LOC102723971A0A1B0GUV8 181 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 TARSL2A2RTX5 802 aaKnown RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 TYW5A2RUC4 315 aaKnown RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 LRRC72A6NJI9 287 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 KCNU1A8MYU2 1149 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 TMEM233B4DJY2 109 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 C10orf142B7Z368 130 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 POC1B-GALNT4F8VUJ3 575 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 TMX2-CTNND1H3BSU7 103 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 PDXKO00764 312 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 ALOX15BO15296 676 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 NKX2-8O15522 239 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 RNF8O76064 485 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 TJP3O95049 919 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 YEATS4O95619 227 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 SEMA4FO95754 770 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 SCGB1D2O95969 90 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 ASS1P00966 412 aaKnown RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 SRPRAP08240 638 aaKnown RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 CHRM5P08912 532 aaPredicted RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 NHLRC4P0CG21 123 aaPredicted RBP3.96□□□□□ -1.78
USP54-217ENST00000498213 PRKAR1AP10644 381 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 CKMT1AP12532 417 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 IDEP14735 1019 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 CD1EP15812 388 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 LMO2P25791 158 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 EPHA3P29320 983 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 CSTF2P33240 577 aaKnown RBP eCLIP3.96□□□□□ -1.78
USP54-217ENST00000498213 PTGER1P34995 402 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 UGT1A5P35504 534 aa3.96□□□□□ -1.78
USP54-217ENST00000498213 ARHGAP25P42331 645 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms