RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ANO6Q4KMQ2 910 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 C1orf189Q5VU69 101 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 CDHR3Q6ZTQ4 885 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 CFAP206Q8IYR0 622 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 ACVR1CQ8NER5 493 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 ZNF398Q8TD17 642 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 TM9SF4Q92544 642 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 MOCOSQ96EN8 888 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 TRAPPC9Q96Q05 1148 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 PITPNM3Q9BZ71 974 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 NAT10Q9H0A0 1025 aaKnown RBP13.53□□□□□ -0.24
VARS-227ENST00000489979 AGPAT4Q9NRZ5 378 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 SMOXQ9NWM0 555 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 P4HTMQ9NXG6 502 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 HACD3Q9P035 362 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 GPN3Q9UHW5 284 aaPredicted RBP13.53□□□□□ -0.24
VARS-227ENST00000489979 ENTPD4Q9Y227 616 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 HEBP2Q9Y5Z4 205 aa13.53□□□□□ -0.24
VARS-227ENST00000489979 KLHL33A6NCF5 533 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 SMTNL1A8MU46 457 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 BTN3A1O00481 513 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 SGTAO43765 313 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 PRAMEF1O95521 474 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 IGHEP01854 428 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 ZFXP17010 805 aaPredicted RBP13.52□□□□□ -0.25
VARS-227ENST00000489979 NFKB1P19838 968 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 FOLR3P41439 243 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 TNNT3P45378 269 aaPredicted RBP13.52□□□□□ -0.25
VARS-227ENST00000489979 PER3P56645 1201 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 FOXL2P58012 376 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 DYNLT1P63172 113 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 ZRSR2Q15696 482 aaKnown RBP13.52□□□□□ -0.25
VARS-227ENST00000489979 BCL7AQ4VC05 210 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 CLEC17AQ6ZS10 378 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 KCNMB4Q86W47 210 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 RFX6Q8HWS3 928 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 GPR135Q8IZ08 494 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 MRGPRX2Q96LB1 330 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 LINC00615Q96LM1 132 aaPredicted RBP13.52□□□□□ -0.25
VARS-227ENST00000489979 FERD3LQ96RJ6 166 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 C17orf62Q9BQA9 187 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 CCM2Q9BSQ5 444 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 UNKQ9C0B0 810 aaKnown RBP13.52□□□□□ -0.25
VARS-227ENST00000489979 DEF6Q9H4E7 631 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 NENFQ9UMX5 172 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 OSGIN2Q9Y236 505 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 CSAG2Q9Y5P2 127 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 PCM1Q15154 2024 aa13.52□□□□□ -0.25
VARS-227ENST00000489979 A0A1W2PQJ5 194 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 E2F3O00716 465 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 STX7O15400 261 aaKnown RBP13.51□□□□□ -0.25
VARS-227ENST00000489979 EPOP01588 193 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 H2AFZP0C0S5 128 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 PYGMP11217 842 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 RIPPLY3P57055 190 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 SOX8P57073 446 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 WASHC5Q12768 1159 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 MESDQ14696 234 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 PRKD1Q15139 912 aaPredicted RBP13.51□□□□□ -0.25
VARS-227ENST00000489979 SLC1A5Q15758 541 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 SP5Q6BEB4 398 aaPredicted RBP13.51□□□□□ -0.25
VARS-227ENST00000489979 H2AFVQ71UI9 128 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 PPP1R32Q7Z5V6 425 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 VSIG1Q86XK7 387 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 TMEM151BQ8IW70 566 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 OR2Y1Q8NGV0 311 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 CPLX3Q8WVH0 158 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 N4BP2L2Q92802 583 aaPredicted RBP13.51□□□□□ -0.25
VARS-227ENST00000489979 RBM41Q96IZ5 413 aaKnown RBP13.51□□□□□ -0.25
VARS-227ENST00000489979 WDR77Q9BQA1 342 aaPredicted RBP13.51□□□□□ -0.25
VARS-227ENST00000489979 BPIFA3Q9BQP9 254 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 PACSIN1Q9BY11 444 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 ATP13A2Q9NQ11 1180 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 IFT80Q9P2H3 777 aaPredicted RBP13.51□□□□□ -0.25
VARS-227ENST00000489979 NDOR1Q9UHB4 597 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 LCMT1Q9UIC8 334 aa13.51□□□□□ -0.25
VARS-227ENST00000489979 NOVA2Q9UNW9 492 aaKnown RBP13.51□□□□□ -0.25
VARS-227ENST00000489979 NUP210LQ5VU65 1888 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 CSMD2Q7Z408 3487 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 F8P00451 2351 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 C2orf74A8MZ97 194 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 ZG16O60844 167 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 CNOT3O75175 753 aaKnown RBP13.5□□□□□ -0.25
VARS-227ENST00000489979 SERPINC1P01008 464 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 KRT1P04264 644 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 ITGA3P26006 1051 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 DCDP81605 110 aaKnown RBP13.5□□□□□ -0.25
VARS-227ENST00000489979 ZBED6P86452 979 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 SLC9A5Q14940 896 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 HIF1AQ16665 826 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 CYP2A13Q16696 494 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 DEFB110Q30KQ9 67 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 RHBDD2Q6NTF9 364 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 IPMKQ8NFU5 416 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 OR52E1Q8NGJ3 308 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 HM13Q8TCT9 377 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 CTNNBL1Q8WYA6 563 aaPredicted RBP13.5□□□□□ -0.25
VARS-227ENST00000489979 RNF25Q96BH1 459 aaPredicted RBP13.5□□□□□ -0.25
VARS-227ENST00000489979 PTERQ96BW5 349 aa13.5□□□□□ -0.25
VARS-227ENST00000489979 OXNAD1Q96HP4 312 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms