RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CCL22O00626 93 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 AGFG2O95081 481 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 CRTAMO95727 393 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 ITGALP20701 1170 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 CYP2A7P20853 494 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 PRDX3P30048 256 aaKnown RBP12.03□□□□□ -0.48
CPSF3-204ENST00000489403 PREPP48147 710 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 CDKN1CP49918 316 aaPredicted RBP12.03□□□□□ -0.48
CPSF3-204ENST00000489403 VAV2P52735 878 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 ITGA1P56199 1179 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 TBX2Q13207 712 aaPredicted RBP12.03□□□□□ -0.48
CPSF3-204ENST00000489403 PTCHD3Q3KNS1 767 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 PRR30Q53SZ7 412 aaPredicted RBP12.03□□□□□ -0.48
CPSF3-204ENST00000489403 DENND5AQ6IQ26 1287 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 SNX20Q7Z614 316 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 ZBTB2Q8N680 514 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 Q8NA96 180 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 OR52E1Q8NGJ3 308 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 ACTL9Q8TC94 416 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 FERD3LQ96RJ6 166 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 FAM118BQ9BPY3 351 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 NUDT9Q9BW91 350 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 PITPNM3Q9BZ71 974 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 SRMSQ9H3Y6 488 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 ACTR5Q9H9F9 607 aaPredicted RBP12.03□□□□□ -0.48
CPSF3-204ENST00000489403 SYTL2Q9HCH5 934 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 LUZP4Q9P127 313 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 AAR2Q9Y312 384 aaKnown RBP12.03□□□□□ -0.48
CPSF3-204ENST00000489403 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.03□□□□□ -0.48
CPSF3-204ENST00000489403 PCDHGB7Q9Y5F8 929 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 LRRK2Q5S007 2527 aa12.02□□□□□ -0.48
CPSF3-204ENST00000489403 IGLV3-16A0A075B6K0 115 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 MACROD2A1Z1Q3 448 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 CFAP99D6REC4 459 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 IFRD1O00458 451 aaPredicted RBP12.02□□□□□ -0.49
CPSF3-204ENST00000489403 ZNF185O15231 689 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 KCNN4O15554 427 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 PJA2O43164 708 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 PRSS56P0CW18 603 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 RNF224P0DH78 156 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 RBP3P10745 1247 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 PVRP15151 417 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 ACRV1P26436 265 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 PDHA2P29803 388 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 MC4RP32245 332 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 HADHAP40939 763 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 PRPSAP1Q14558 356 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 INPP5JQ15735 1006 aaPredicted RBP12.02□□□□□ -0.49
CPSF3-204ENST00000489403 C4orf17Q53FE4 359 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 CCDC181Q5TID7 509 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 ZNF385CQ66K41 422 aaPredicted RBP12.02□□□□□ -0.49
CPSF3-204ENST00000489403 JMJD6Q6NYC1 403 aaPredicted RBP12.02□□□□□ -0.49
CPSF3-204ENST00000489403 CDKL3Q8IVW4 592 aaPredicted RBP12.02□□□□□ -0.49
CPSF3-204ENST00000489403 PHC3Q8NDX5 983 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 CCDC110Q8TBZ0 833 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 HEXDCQ8WVB3 486 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 DNAJC1Q96KC8 554 aaKnown RBP12.02□□□□□ -0.49
CPSF3-204ENST00000489403 TRAPPC9Q96Q05 1148 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 C19orf43Q9BQ61 176 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 TBL1YQ9BQ87 522 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 FERMT1Q9BQL6 677 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 HGH1Q9BTY7 390 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 KLHL25Q9H0H3 589 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 TFB2MQ9H5Q4 396 aaKnown RBP12.02□□□□□ -0.49
CPSF3-204ENST00000489403 XKR8Q9H6D3 395 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 ZDHHC3Q9NYG2 299 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 ACTR10Q9NZ32 417 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 PLEKHB1Q9UF11 243 aaPredicted RBP12.02□□□□□ -0.49
CPSF3-204ENST00000489403 FER1L5A0AVI2 2057 aa12.02□□□□□ -0.49
CPSF3-204ENST00000489403 TRBV5-4A0A0C4DH59 114 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 A6NL46 340 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 C2orf74A8MZ97 194 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 E7EQ34 232 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 LDB2O43679 373 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 DPM1O60762 260 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 SEMA7AO75326 666 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 CTNNA1P35221 906 aaKnown RBP12.01□□□□□ -0.49
CPSF3-204ENST00000489403 CD151P48509 253 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 EIF3EP60228 445 aaKnown RBP12.01□□□□□ -0.49
CPSF3-204ENST00000489403 COPS2P61201 443 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 ATP1A4Q13733 1029 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 SPARCL1Q14515 664 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 NCF4Q15080 339 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 ZRANB3Q5FWF4 1079 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 SLC6A19Q695T7 634 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 SARM1Q6SZW1 724 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 CDHR3Q6ZTQ4 885 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 MED25Q71SY5 747 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 AMIGO1Q86WK6 493 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 KLHDC8BQ8IXV7 354 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 ADGRF3Q8IZF5 1079 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 RBMXL3Q8N7X1 1067 aaKnown RBP12.01□□□□□ -0.49
CPSF3-204ENST00000489403 TMEM102Q8N9M5 508 aaPredicted RBP12.01□□□□□ -0.49
CPSF3-204ENST00000489403 TC2NQ8N9U0 490 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 GLIS1Q8NBF1 620 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 SSC4DQ8WTU2 575 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 SPATA13Q96N96 652 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 SMAD5Q99717 465 aaKnown RBP12.01□□□□□ -0.49
CPSF3-204ENST00000489403 MFRPQ9BY79 579 aa12.01□□□□□ -0.49
CPSF3-204ENST00000489403 SLC7A5P2Q9GIP4 190 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms