RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 LRRC8EQ6NSJ5 796 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 IYDQ6PHW0 289 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 NEK10Q6ZWH5 1172 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 KANSL1Q7Z3B3 1105 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 PDZD3Q86UT5 571 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 SRRM1Q8IYB3 904 aaKnown RBP11.96□□□□□ -0.49
SDC1-206ENST00000482879 KCTD4Q8WVF5 259 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 TFGQ92734 400 aaPredicted RBP11.96□□□□□ -0.49
SDC1-206ENST00000482879 NXNL1Q96CM4 212 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 PDLIM5Q96HC4 596 aaKnown RBP11.96□□□□□ -0.49
SDC1-206ENST00000482879 UBXN10Q96LJ8 280 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 C12orf66Q96MD2 445 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 FOPNLQ96NB1 174 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 INSM2Q96T92 566 aaPredicted RBP11.96□□□□□ -0.49
SDC1-206ENST00000482879 UNKQ9C0B0 810 aaKnown RBP11.96□□□□□ -0.49
SDC1-206ENST00000482879 STMN4Q9H169 189 aaPredicted RBP11.96□□□□□ -0.49
SDC1-206ENST00000482879 PCMTD2Q9NV79 361 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 DNAAF2Q9NVR5 837 aaKnown RBP11.96□□□□□ -0.49
SDC1-206ENST00000482879 SCHIP1Q9P0W5 487 aaPredicted RBP11.96□□□□□ -0.49
SDC1-206ENST00000482879 SIRPGQ9P1W8 387 aa11.96□□□□□ -0.49
SDC1-206ENST00000482879 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.96□□□□□ -0.49
SDC1-206ENST00000482879 RUVBL2Q9Y230 463 aaKnown RBP11.96□□□□□ -0.49
SDC1-206ENST00000482879 CFAP20Q9Y6A4 193 aaKnown RBP11.96□□□□□ -0.49
SDC1-206ENST00000482879 ZFHX2Q9C0A1 2572 aaPredicted RBP11.96□□□□□ -0.5
SDC1-206ENST00000482879 PTPRZ1P23471 2315 aaPredicted RBP11.95□□□□□ -0.5
SDC1-206ENST00000482879 A6NCN8 305 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 OR5K4A6NMS3 321 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 OR52A4PA6NMU1 304 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 CDX4O14627 284 aaPredicted RBP11.95□□□□□ -0.5
SDC1-206ENST00000482879 ATP8B1O43520 1251 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 KLHL2O95198 593 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 ZNF883P0CG24 379 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 ALPPL2P10696 532 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 COL6A2P12110 1019 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 SLC2A4P14672 509 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 KRT4P19013 534 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 TGM1P22735 817 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 SLC26A3P40879 764 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 ATP6V0D1P61421 351 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 DLG1Q12959 904 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 FAM83EQ2M2I3 478 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 AASDHQ4L235 1098 aaPredicted RBP11.95□□□□□ -0.5
SDC1-206ENST00000482879 OGFOD3Q6PK18 319 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 PRR23CQ6ZRP0 262 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 SH2D5Q6ZV89 423 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 ASCL5Q7RTU5 278 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 SFTPA2Q8IWL1 248 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 CENPLQ8N0S6 344 aaPredicted RBP11.95□□□□□ -0.5
SDC1-206ENST00000482879 NAGSQ8N159 534 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 C4orf33Q8N1A6 199 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 PLD6Q8N2A8 252 aaKnown RBP11.95□□□□□ -0.5
SDC1-206ENST00000482879 GOLGA6L1Q8N7Z2 621 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 PHC3Q8NDX5 983 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 PATE1Q8WXA2 126 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 TSNARE1Q96NA8 513 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 FERD3LQ96RJ6 166 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 EDEM2Q9BV94 578 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 DUSP23Q9BVJ7 150 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 DERL2Q9GZP9 239 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 NMRAL1Q9HBL8 299 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 TMEM9BQ9NQ34 198 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 RXFP3Q9NSD7 469 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 IGSF5Q9NSI5 407 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 IMP3Q9NV31 184 aaKnown RBP11.95□□□□□ -0.5
SDC1-206ENST00000482879 NLGN3Q9NZ94 848 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 SENP1Q9P0U3 644 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 NOVA2Q9UNW9 492 aaKnown RBP11.95□□□□□ -0.5
SDC1-206ENST00000482879 ASF1AQ9Y294 204 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 HEBP2Q9Y5Z4 205 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 ASXL3Q9C0F0 2248 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 RP1P56715 2156 aa11.95□□□□□ -0.5
SDC1-206ENST00000482879 UNC13CQ8NB66 2214 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 KIR2DS5A0A0G2JLQ3 304 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 A0A0G2JNG1 304 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 KIR2DS3K7RE56 304 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 CDC7O00311 574 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 BTN3A1O00481 513 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 TRIM38O00635 465 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 ZBTB14O43829 449 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 FOXD2O60548 495 aaPredicted RBP11.94□□□□□ -0.5
SDC1-206ENST00000482879 MATN4O95460 622 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 GIMD1P0DJR0 217 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 MTHFD1P11586 935 aaKnown RBP11.94□□□□□ -0.5
SDC1-206ENST00000482879 CD1DP15813 335 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 CCNFP41002 786 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 SLC19A1P41440 591 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 MAPK9P45984 424 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 SLC18A2Q05940 514 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 KRT33BQ14525 404 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 KIR2DS5Q14953 304 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 TNFAIP8L3Q5GJ75 292 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 C6orf132Q5T0Z8 1188 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 AGBL2Q5U5Z8 902 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 KLC3Q6P597 504 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 UNC5DQ6UXZ4 953 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 CLEC14AQ86T13 490 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 EXOC3L1Q86VI1 746 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 TRIM48Q8IWZ4 208 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 EID2Q8N6I1 236 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 OR4C6Q8NH72 309 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms