RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 RAB28P51157 221 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 SUOXP51687 545 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 EFNA5P52803 228 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 TPTEP56180 551 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 DSTNP60981 165 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 UBE2IP63279 158 aaKnown RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 DR1Q01658 176 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 KDSRQ06136 332 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 TGM3Q08188 693 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 TBL3Q12788 808 aaKnown RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 OLIG2Q13516 323 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 PDIA5Q14554 519 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 HERC3Q15034 1050 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 STK38Q15208 465 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 PPP1R2P3Q6NXS1 205 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 C8orf74Q6P047 294 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 DENND1BQ6P3S1 775 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 BRAT1Q6PJG6 821 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 SARM1Q6SZW1 724 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 CLEC9AQ6UXN8 241 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 TOM1L2Q6ZVM7 507 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 CDR2LQ86X02 465 aaPredicted RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 VRK3Q8IV63 474 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 CLYBLQ8N0X4 340 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 ARFGAP2Q8N6H7 521 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 ZNF366Q8N895 744 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 CADM4Q8NFZ8 388 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 OR6S1Q8NH40 331 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 PSMA8Q8TAA3 256 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 UBLCP1Q8WVY7 318 aaPredicted RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 MAIP1Q8WWC4 291 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 XAGE5Q8WWM1 108 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 NEU4Q8WWR8 484 aaPredicted RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 TFAP2BQ92481 460 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 LARP4BQ92615 738 aaKnown RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 CELF1Q92879 486 aaKnown RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 ST6GALNAC6Q969X2 333 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 HDAC11Q96DB2 347 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 ELMOD3Q96FG2 381 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 THOC1Q96FV9 657 aaKnown RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 HMCESQ96FZ2 354 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 PGAM5Q96HS1 289 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 RBM41Q96IZ5 413 aaKnown RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 KLHL5Q96PQ7 755 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 PPP1R10Q96QC0 940 aaKnown RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 CCT7Q99832 543 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.07□□□□□ -1.76
VPS41-212ENST00000482217 DPCDQ9BVM2 203 aaPredicted RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 MRPL1Q9BYD6 325 aaKnown RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 CTDSP1Q9GZU7 261 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 FAM192AQ9GZU8 254 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 RAB17Q9H0T7 212 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 TOR3AQ9H497 397 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 EXO5Q9H790 373 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 CYP3A43Q9HB55 503 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 MRPL47Q9HD33 250 aaKnown RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 TREM1Q9NP99 234 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 PNPLA3Q9NST1 481 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 SERTAD4Q9NUC0 356 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.07□□□□□ -1.76
VPS41-212ENST00000482217 HYPKQ9NX55 129 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 GDE1Q9NZC3 331 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 EMC3Q9P0I2 261 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 HSPB7Q9UBY9 170 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 HMGXB4Q9UGU5 601 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 ING1Q9UK53 422 aaPredicted RBP4.07□□□□□ -1.76
VPS41-212ENST00000482217 MAB21L2Q9Y586 359 aa4.07□□□□□ -1.76
VPS41-212ENST00000482217 NPHP3Q7Z494 1330 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 SH3TC1Q8TE82 1336 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 POLR2AP24928 1970 aaKnown RBP4.06□□□□□ -1.76
VPS41-212ENST00000482217 A0A075B6Q4 140 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 SLC15A5A6NIM6 579 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 AGAP5A6NIR3 686 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 A6NL46 340 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 OR2AG2A6NM03 316 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 LRRIQ3A6PVS8 624 aaPredicted RBP4.06□□□□□ -1.76
VPS41-212ENST00000482217 CCDC188H7C350 402 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 TLR4O00206 839 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 TRDMT1O14717 391 aaKnown RBP4.06□□□□□ -1.76
VPS41-212ENST00000482217 SLC30A4O14863 429 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 CLDN3O15551 220 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 PMPCBO75439 489 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 CLN5O75503 358 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 WDR47O94967 919 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 VNN1O95497 513 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 LGI1O95970 557 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 CH25HO95992 272 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 BCL10O95999 233 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 CLPTM1O96005 669 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 YES1P07947 543 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 ACAA1P09110 424 aaPredicted RBP4.06□□□□□ -1.76
VPS41-212ENST00000482217 OR52Z1P0C646 297 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 PABPC4LP0CB38 370 aaKnown RBP4.06□□□□□ -1.76
VPS41-212ENST00000482217 OR8G3PP0DMU2 310 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 KRT3P12035 628 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 LYL1P12980 280 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 PKMP14618 531 aaKnown RBP4.06□□□□□ -1.76
VPS41-212ENST00000482217 CHN1P15882 459 aa4.06□□□□□ -1.76
VPS41-212ENST00000482217 DDX5P17844 614 aaKnown RBP4.06□□□□□ -1.76
VPS41-212ENST00000482217 ACHEP22303 614 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms