RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, human

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPHP4-208	ENST00000478423	OR52L1	Q8NGH7	329 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	VANGL1	Q8TAA9	524 aa	Predicted RBP	13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	ZSCAN5A	Q9BUG6	496 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	CLN6	Q9NWW5	311 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	OSER1	Q9NX31	292 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	B4GALT6	Q9UBX8	382 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	IL36A	Q9UHA7	158 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	TRIM24	O15164	1050 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	CCNYL3	P0C7X3	344 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	DDX6	P26196	483 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	AP1S2	P56377	157 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	LAPTM5	Q13571	262 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	DGUOK	Q16854	277 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	SPANXN2	Q5MJ10	180 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	SWT1	Q5T5J6	900 aa	Known RBP	13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	TMEM135	Q86UB9	458 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	TTC9B	Q8N6N2	239 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	LRTOMT	Q8WZ04	291 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	NUS1	Q96E22	293 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	MRGPRX2	Q96LB1	330 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	NUAK2	Q9H093	628 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	NSUN3	Q9H649	340 aa	Known RBP	13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	KLHL1	Q9NR64	748 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	SLC22A14	Q9Y267	594 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	F5	P12259	2224 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	CACNA1S	Q13698	1873 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	ZBTB42	B2RXF5	422 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	SLC22A2	O15244	555 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	ACP5	P13686	325 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	TMED10	P49755	219 aa	Known RBP	13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	NFKB2	Q00653	900 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	TRAF3	Q13114	568 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	ZNF544	Q6NX49	715 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	FRMD7	Q6ZUT3	714 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	ZBTB46	Q86UZ6	589 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	OR9I1	Q8NGQ6	314 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	OVCA2	Q8WZ82	227 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	AKAP7	Q9P0M2	348 aa	Predicted RBP	13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	COL18A1	P39060	1754 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	UPK3BL1	B0FP48	263 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	UPK3BL2	E5RIL1	263 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	PFKM	P08237	780 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	HOXB6	P17509	224 aa	Known RBP	13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	SLC26A3	P40879	764 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	SRSF11	Q05519	484 aa	Known RBP	13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	CYP4F3	Q08477	520 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	HEPACAM	Q14CZ8	416 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	ATP13A5	Q4VNC0	1218 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	ARMC4	Q5T2S8	1044 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	C6orf52	Q5T4I8	152 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	GALNT5	Q7Z7M9	940 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	GPR135	Q8IZ08	494 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	KIAA1191	Q96A73	305 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	CENPN	Q96H22	339 aa	Predicted RBP	13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	MIPEP	Q99797	713 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	SLC39A3	Q9BRY0	314 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	FEM1A	Q9BSK4	669 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	RSPH9	Q9H1X1	276 aa	Predicted RBP	13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	MOCS1	Q9NZB8	636 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	CCDC189	A1A4V9	331 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	PIPSL	A2A3N6	862 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	MAGEB17	A8MXT2	336 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	FAM25A	B3EWG3	89 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	FAM25C	B3EWG5	89 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	FAM25G	B3EWG6	89 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	PITPNM1	O00562	1244 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	DNAJA2	O60884	412 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	STC2	O76061	302 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	CMPK1	P30085	196 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	TIE1	P35590	1138 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	PNLIPRP1	P54315	467 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	ATP1A4	Q13733	1029 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	MRPL10	Q7Z7H8	261 aa	Known RBP	13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	TEFM	Q96QE5	360 aa	Known RBP	13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	SLC32A1	Q9H598	525 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	CAB39	Q9Y376	341 aa	Predicted RBP	13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	MYH9	P35579	1960 aa	Known RBP	13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	FAM234B	A2RU67	622 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	SOCS7	O14512	581 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	TEX28	O15482	410 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	TBX10	O75333	385 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	GSTM5	P46439	218 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	PTS	Q03393	145 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	GPR107	Q5VW38	600 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	KBTBD2	Q8IY47	623 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	GAS2L1	Q99501	681 aa	Predicted RBP	13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	EBF3	Q9H4W6	596 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	WDR26	Q9H7D7	661 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	RASSF1	Q9NS23	344 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	OGDHL	Q9ULD0	1010 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	POLR1D	Q9Y2S0	133 aa		13.96	□□□□□ -0.17
NPHP4-208	ENST00000478423	C2orf78	A6NCI8	922 aa		13.96	□□□□□ -0.18
NPHP4-208	ENST00000478423	SCEL	O95171	688 aa		13.96	□□□□□ -0.18
NPHP4-208	ENST00000478423	ACTR1B	P42025	376 aa		13.96	□□□□□ -0.18
NPHP4-208	ENST00000478423	PGGT1B	P53609	377 aa		13.96	□□□□□ -0.18
NPHP4-208	ENST00000478423	ACTR1A	P61163	376 aa		13.96	□□□□□ -0.18
NPHP4-208	ENST00000478423	RPL26	P61254	145 aa	Known RBP	13.96	□□□□□ -0.18
NPHP4-208	ENST00000478423	KRR1	Q13601	381 aa	Known RBP	13.96	□□□□□ -0.18
NPHP4-208	ENST00000478423	TMEM214	Q6NUQ4	689 aa	Known RBP	13.96	□□□□□ -0.18
NPHP4-208	ENST00000478423	RBM44	Q6ZP01	1051 aa	Known RBP	13.96	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms