RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 TMOD2Q9NZR1 351 aa4.09□□□□□ -1.75
VPS13D-207ENST00000476169 CTNNA3Q9UI47 895 aa4.09□□□□□ -1.75
VPS13D-207ENST00000476169 TRMT6Q9UJA5 497 aaKnown RBP4.09□□□□□ -1.75
VPS13D-207ENST00000476169 TTC7AQ9ULT0 858 aaPredicted RBP4.09□□□□□ -1.75
VPS13D-207ENST00000476169 B3GALT5Q9Y2C3 310 aa4.09□□□□□ -1.75
VPS13D-207ENST00000476169 SLC4A4Q9Y6R1 1079 aa4.09□□□□□ -1.75
VPS13D-207ENST00000476169 TRBV2A0A0J9YWF9 115 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 MAGEA13PA6NCF6 341 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 ANKUB1A6NFN9 424 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 MANSC4A6NHS7 340 aaPredicted RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 B8ZZF3 427 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 PPP6CO00743 305 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 HSPB6O14558 160 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 IKBKBO14920 756 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 XRCC3O43542 346 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 FCGR3BO75015 233 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 TSC22D2O75157 780 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 SCGB2A1O75556 95 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 PRDM1O75626 825 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 PALMO75781 387 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 LUC7L3O95232 432 aaKnown RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 SPP1P10451 314 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 HSPA5P11021 654 aaKnown RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 DDX5P17844 614 aaKnown RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 CD58P19256 250 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 PSMB4P28070 264 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 CHATP28329 748 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 ADSSP30520 456 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 TNFSF8P32971 234 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 ASCL1P50553 236 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 METAP2P50579 478 aaKnown RBP eCLIP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 INHBCP55103 352 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 KRTAP10-2P60368 255 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 TRA2BP62995 288 aaKnown RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 GAD2Q05329 585 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 ELP6Q0PNE2 266 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 SLC10A2Q12908 348 aaPredicted RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 MAD2L1Q13257 205 aaPredicted RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 TNK1Q13470 666 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 FHL2Q14192 279 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 MELKQ14680 651 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 EIF2S3LQ2VIR3 472 aaKnown RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 C6orf10Q5SRN2 563 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 CCDC183Q5T5S1 534 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 NSUN5P2Q63ZY6 315 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 RAET1GQ6H3X3 334 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 OR6B2Q6IFH4 312 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 METTL2BQ6P1Q9 378 aaKnown RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 SLC27A1Q6PCB7 646 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 AFTPHQ6ULP2 937 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 NHLRC1Q6VVB1 395 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 ZNF782Q6ZMW2 699 aaPredicted RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 WDR88Q6ZMY6 472 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 ZNF66Q6ZN08 573 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 FAM205AQ6ZU69 1335 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 MTSS1LQ765P7 747 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 LPCAT2Q7L5N7 544 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 DSELQ8IZU8 1212 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 RASGEF1CQ8N431 466 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 ZNF611Q8N823 705 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 CLEC1AQ8NC01 280 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 KIAA0895Q8NCT3 520 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 AGBL3Q8NEM8 1001 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 OR2AJ1Q8NGZ0 328 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 B4GALNT2Q8NHY0 566 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 RNASE8Q8TDE3 154 aaKnown RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 SNAPC3Q92966 411 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 RAB7BQ96AH8 199 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 MOB3AQ96BX8 217 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 METTL2AQ96IZ6 378 aaKnown RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 ZNF333Q96JL9 665 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 PRMT6Q96LA8 375 aaPredicted RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 PANX3Q96QZ0 392 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 SEMA3CQ99985 751 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 MOV10L1Q9BXT6 1211 aaKnown RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 NPFFR1Q9GZQ6 430 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 TMEM39BQ9GZU3 492 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 NT5C3AQ9H0P0 336 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 RAB17Q9H0T7 212 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 SNX25Q9H3E2 840 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 COQ10BQ9H8M1 238 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 RAB9BQ9NP90 201 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 THSD1Q9NS62 852 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 SOHLH2Q9NX45 425 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 ANKMY1Q9P2S6 941 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 MAD2L2Q9UI95 211 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 AGO2Q9UKV8 859 aaKnown RBP4.08□□□□□ -1.76
VPS13D-207ENST00000476169 KCNK6Q9Y257 313 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 NUDCQ9Y266 331 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 EXOC6BQ9Y2D4 811 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 PADI2Q9Y2J8 665 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 NFE2L3Q9Y4A8 694 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 STON1Q9Y6Q2 735 aa4.08□□□□□ -1.76
VPS13D-207ENST00000476169 ARID1BQ8NFD5 2236 aaPredicted RBP4.07□□□□□ -1.76
VPS13D-207ENST00000476169 ARHGEF17Q96PE2 2063 aaPredicted RBP4.07□□□□□ -1.76
VPS13D-207ENST00000476169 SMARCA4P51532 1647 aa4.07□□□□□ -1.76
VPS13D-207ENST00000476169 BAZ1AQ9NRL2 1556 aaPredicted RBP4.07□□□□□ -1.76
VPS13D-207ENST00000476169 BAZ1BQ9UIG0 1483 aaKnown RBP4.07□□□□□ -1.76
VPS13D-207ENST00000476169 SYNRGQ9UMZ2 1314 aa4.07□□□□□ -1.76
VPS13D-207ENST00000476169 TRBV5-3A0A0A0MS03 114 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms