RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 SCRG1O75711 98 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CEACAM4O75871 244 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 DNAJB5O75953 348 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TJP3O95049 919 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RAB40ALP0C0E4 278 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SLC35G4P0C7Q5 338 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RALBP11234 206 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ACRV1P26436 265 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PDHA2P29803 388 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PRDX3P30048 256 aaKnown RBP11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ARCN1P48444 511 aaKnown RBP11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RWDD2BP57060 319 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ABRQ12979 859 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RPA4Q13156 261 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 KLF1Q13351 362 aaPredicted RBP11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SPARCL1Q14515 664 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PRPSAP1Q14558 356 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PARP6Q2NL67 630 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PRAMEF17Q5VTA0 474 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ZNF385CQ66K41 422 aaPredicted RBP11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 DARS2Q6PI48 645 aaKnown RBP11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RAD9BQ6WBX8 426 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ASB18Q6ZVZ8 466 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TMTC1Q8IUR5 882 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PIANPQ8IYJ0 282 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ADGRF3Q8IZF5 1079 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CDKN2AIPNLQ96HQ2 116 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 DNAJC1Q96KC8 554 aaKnown RBP11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 COPS8Q99627 209 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 FERMT1Q9BQL6 677 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CHST8Q9H2A9 424 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 LUC7LQ9NQ29 371 aaKnown RBP11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CRLS1Q9UJA2 301 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 MAN2B2Q9Y2E5 1009 aa11.9□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 GRID2IPA4D2P6 1211 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 MROH6A6NGR9 719 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 MEN1O00255 615 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 BTN3A1O00481 513 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 ZNF189O75820 626 aaPredicted RBP11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 METTL18O95568 372 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 GSTM1P09488 218 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 PRSS56P0CW18 603 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TPBGLP0DKB5 382 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 ST6GAL1P15907 406 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 ITGALP20701 1170 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 MC4RP32245 332 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 GSDMDP57764 484 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 RPS15P62841 145 aaKnown RBP11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TMPRSS15P98073 1019 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 GSTM4Q03013 218 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 BOP1Q14137 746 aaKnown RBP11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TMTC4Q5T4D3 741 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 SERPINA9Q86WD7 417 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TMEM126BQ8IUX1 230 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 OR1L3Q8NH93 324 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 SLC35B2Q8TB61 432 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 DCUN1D1Q96GG9 259 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 MRFAP1L1Q96HT8 127 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 PSMG3-AS1Q96PY0 264 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TRAPPC9Q96Q05 1148 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TLR10Q9BXR5 811 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 NLNQ9BYT8 704 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 CHRNA10Q9GZZ6 450 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 MVB12BQ9H7P6 319 aa11.89□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 CFAP99D6REC4 459 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 STK10O94804 968 aaKnown RBP11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 ACADLP28330 430 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 GABRA4P48169 554 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 ARL4DP49703 201 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 MLLT10P55197 1068 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 GSE1Q14687 1217 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 CCDC181Q5TID7 509 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 CPZQ66K79 652 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 ARMC6Q6NXE6 501 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 FAM198BQ6UWH4 519 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 CLDN19Q8N6F1 224 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TEX19Q8NA77 164 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 PHC3Q8NDX5 983 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 OR52E1Q8NGJ3 308 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 FLVCR1-AS1Q8TAF5 88 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 STYXQ8WUJ0 223 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 LCN9Q8WX39 176 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 CPT1BQ92523 772 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TFGQ92734 400 aaPredicted RBP11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 FERD3LQ96RJ6 166 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 SRMSQ9H3Y6 488 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 PCMTD2Q9NV79 361 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 FAM8A1Q9UBU6 413 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TCFL5Q9UL49 500 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 CNTRLQ7Z7A1 2325 aa11.88□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 DOCK10Q96BY6 2186 aa11.87□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 DDX3YO15523 660 aaKnown RBP11.87□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 SORBS2O94875 1100 aaKnown RBP11.87□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 AP2A2O94973 939 aa11.87□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 AP2A1O95782 977 aa11.87□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 KLK3P07288 261 aaPredicted RBP11.87□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TPH1P17752 444 aa11.87□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 CDH3P22223 829 aa11.87□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 ZNF75DP51815 510 aa11.87□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 VAV2P52735 878 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms