RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	MATN2	O00339	956 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	CD3EAP	O15446	510 aa	Known RBP	11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	STK17B	O94768	372 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	APOA4	P06727	396 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	TPSB2	P20231	275 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	PPP1CA	P62136	330 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	SH3BP2	P78314	561 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	CDK16	Q00536	496 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	RPA4	Q13156	261 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	SRSF6	Q13247	344 aa	Known RBP	11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	TUBB3	Q13509	450 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	TPSAB1	Q15661	275 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	KCTD19	Q17RG1	926 aa	Predicted RBP	11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	INO80C	Q6PI98	192 aa	Predicted RBP	11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	PACS1	Q6VY07	963 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	NAPRT	Q6XQN6	538 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	PRSS42	Q7Z5A4	293 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	LDB1	Q86U70	411 aa	Predicted RBP	11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	PPP1R3B	Q86XI6	285 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	PRELID2	Q8N945	189 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	OR13J1	Q8NGT2	312 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	CFAP61	Q8NHU2	1237 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	ZFPM2	Q8WW38	1151 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	PEX13	Q92968	403 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	ZNF778	Q96MU6	729 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	CD180	Q99467	661 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	MAP3K3	Q99759	626 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	EFHD1	Q9BUP0	239 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	TRIT1	Q9H3H1	467 aa	Known RBP	11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	MVB12B	Q9H7P6	319 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	SYBU	Q9NX95	663 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	PDP2	Q9P2J9	529 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	ASIC3	Q9UHC3	531 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	GNPTG	Q9UJJ9	305 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	RARRES3	Q9UL19	164 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	PRSS21	Q9Y6M0	314 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	ANKRD12	Q6UB98	2062 aa		11.23	□□□□□ -0.61
CPNE1-222	ENST00000473373	EFS	O43281	561 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	SGTA	O43765	313 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	OR1I1	O60431	355 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	PHF2	O75151	1096 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	KIAA0754	O94854	1291 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	CCNYL3	P0C7X3	344 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	SPTB	P11277	2137 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	MAP4	P27816	1152 aa	Known RBP	11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	NMBR	P28336	390 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	PDHA2	P29803	388 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	COIL	P38432	576 aa	Predicted RBP	11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	CD151	P48509	253 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	EIF3B	P55884	814 aa	Known RBP	11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	GNG11	P61952	73 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	PLOD1	Q02809	727 aa	Predicted RBP	11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	ACY1	Q03154	408 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	HSPA14	Q0VDF9	509 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	THOC5	Q13769	683 aa	Known RBP	11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	LY6D	Q14210	128 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	IL11RA	Q14626	422 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	CAPRIN2	Q6IMN6	1127 aa	Known RBP	11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	MRNIP	Q6NTE8	343 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	LRRC8B	Q6P9F7	803 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	TTC23L	Q6PF05	361 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	CES3	Q6UWW8	571 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	REXO1L1P	Q8IX06	675 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	RASGEF1C	Q8N431	466 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	ESX1	Q8N693	406 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	OR52E1	Q8NGJ3	308 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	NKD1	Q969G9	470 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	CAPZA3	Q96KX2	299 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	PANX3	Q96QZ0	392 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	SEMA4C	Q9C0C4	833 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	RAB33B	Q9H082	229 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	IRAK4	Q9NWZ3	460 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	EPHA6	Q9UF33	1036 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	TSR3	Q9UJK0	312 aa	Known RBP	11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	RIMKLB	Q9ULI2	386 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	MAD1L1	Q9Y6D9	718 aa		11.22	□□□□□ -0.61
CPNE1-222	ENST00000473373	IGHV5-51	A0A0C4DH38	117 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	CTAGE9	A4FU28	777 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	C2orf74	A8MZ97	194 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373		E5RI56	91 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	PRMT5	O14744	637 aa	Predicted RBP	11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	VAPB	O95292	243 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	ZBTB11	O95625	1053 aa	Predicted RBP	11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	RPN2	P04844	631 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	EBLN1	P0CF75	366 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	TCP1	P17987	556 aa	Known RBP	11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	NELFE	P18615	380 aa	Known RBP	11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	HSD11B2	P80365	405 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	KCNAB1	Q14722	419 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	C6orf15	Q6UXA7	325 aa	Predicted RBP	11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	AMIGO1	Q86WK6	493 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	KMT5C	Q86Y97	462 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	TMEM126B	Q8IUX1	230 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	BMPER	Q8N8U9	685 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	OR5AR1	Q8NGP9	310 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	COG1	Q8WTW3	980 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	ASZ1	Q8WWH4	475 aa		11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	ZNF669	Q96BR6	464 aa	Predicted RBP	11.21	□□□□□ -0.61
CPNE1-222	ENST00000473373	FOPNL	Q96NB1	174 aa		11.21	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms