RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PWWP2BQ6NUJ5 590 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 ZNF449Q6P9G9 518 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 KMT5CQ86Y97 462 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 CCDC89Q8N998 374 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 PHC3Q8NDX5 983 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 ACVR1CQ8NER5 493 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 LCN9Q8WX39 176 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 NRTNQ99748 197 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 HGH1Q9BTY7 390 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 SRMSQ9H3Y6 488 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 LZTFL1Q9NQ48 299 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 RAB6BQ9NRW1 208 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 FGF21Q9NSA1 209 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 PRSS21Q9Y6M0 314 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 RELNP78509 3460 aa15.29■□□□□ 0.04
CCDC88B-205ENST00000472524 HEATR9A2RTY3 570 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 SUN1O94901 812 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 ZBTB11O95625 1053 aaPredicted RBP15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 CCNYL3P0C7X3 344 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 CDH3P22223 829 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 NSG1P42857 185 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 HSD11B2P80365 405 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 ITIH4Q14624 930 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 BRD3Q15059 726 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 GPR19Q15760 415 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 IGFBP7Q16270 282 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 ZNF658BQ4V348 819 aaPredicted RBP15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 D2HGDHQ8N465 521 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 GLIS1Q8NBF1 620 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 OR13J1Q8NGT2 312 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 C9orf43Q8TAL5 461 aaPredicted RBP15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 ELMO1Q92556 727 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 HDAC10Q969S8 669 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 SLC2A6Q9UGQ3 507 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 POMT2Q9UKY4 750 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 FER1L5A0AVI2 2057 aa15.28■□□□□ 0.04
CCDC88B-205ENST00000472524 MED13Q9UHV7 2174 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 GOLGA6L3A6NEY3 463 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 BTN3A1O00481 513 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 AP2A2O94973 939 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 GOT2P00505 430 aaKnown RBP15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 MT-ND3P03897 115 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 NTRK1P04629 796 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 APRTP07741 180 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 CCDC175P0C221 793 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 ZSCAN5DPP0CG00 497 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 PSMA3P25788 255 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 CD151P48509 253 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 FOXK1P85037 733 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 RPA4Q13156 261 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 PRKG2Q13237 762 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 SEMA5AQ13591 1074 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 DNASE1L3Q13609 305 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 BOP1Q14137 746 aaKnown RBP15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 SIX1Q15475 284 aaPredicted RBP15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 TMTC4Q5T4D3 741 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 TSTD2Q5T7W7 516 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 AFTPHQ6ULP2 937 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 NAPRTQ6XQN6 538 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 OR52E1Q8NGJ3 308 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 CT55Q8WUE5 264 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 UBE2Q2Q8WVN8 375 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 TFGQ92734 400 aaPredicted RBP15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 TLR10Q9BXR5 811 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 XKR8Q9H6D3 395 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 MVB12BQ9H7P6 319 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 LHX9Q9NQ69 397 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 CASS4Q9NQ75 786 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 PAK5Q9P286 719 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 PADI1Q9ULC6 663 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 PCDHB3Q9Y5E6 796 aa15.27■□□□□ 0.04
CCDC88B-205ENST00000472524 NAV2Q8IVL1 2488 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 FLNCQ14315 2725 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 TNRC6AQ8NDV7 1962 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 SLC9B1P1A6NJY1 282 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 MATN2O00339 956 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 QSOX1O00391 747 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 BTN3A3O00478 584 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 FTH1P02794 183 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 GSTM1P09488 218 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 ADRA1DP25100 572 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 CASRP41180 1078 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 TUBB4BP68371 445 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 GSTM4Q03013 218 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 LAMB3Q13751 1172 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 TUBB2AQ13885 445 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 ERV3-1Q14264 604 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 SYTL3Q4VX76 610 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 PACS1Q6VY07 963 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 TMEM126BQ8IUX1 230 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 OR6P1Q8NGX9 317 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 APOBEC4Q8WW27 367 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 ABHD17AQ96GS6 310 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 ZNF778Q96MU6 729 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 RANBP9Q96S59 729 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 TUBB2BQ9BVA1 445 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 KCND3Q9UK17 655 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 BTRCQ9Y297 605 aa15.26■□□□□ 0.03
CCDC88B-205ENST00000472524 TCAF1Q9Y4C2 921 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms