RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 AFTPHQ6ULP2 937 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 MARK2Q7KZI7 788 aaKnown RBP11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 ADGRG6Q86SQ4 1221 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 CTAGE6Q86UF2 777 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 CTAGE4Q8IX94 777 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 NLGN4XQ8N0W4 816 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 MPP5Q8N3R9 675 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 MMGT1Q8N4V1 131 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 CEP112Q8N8E3 955 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 NLGN4YQ8NFZ3 816 aaPredicted RBP11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 GDAP1Q8TB36 358 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 ULK4Q96C45 1275 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 SPRY4Q9C004 299 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 SLC39A1Q9NY26 324 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 SAMD15Q9P1V8 674 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 ZNHIT2Q9UHR6 403 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 CRLS1Q9UJA2 301 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 SNX24Q9Y343 169 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 UTP11Q9Y3A2 253 aaKnown RBP11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 PLEKHM1Q9Y4G2 1056 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 MAP4K5Q9Y4K4 846 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 PDZD2O15018 2839 aa11.67□□□□□ -0.54
SQSTM1-206ENST00000466342 TRBV5-4A0A0C4DH59 114 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 CCDC162PA2VCL2 907 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 OR51F1A6NGY5 319 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 CHUKO15111 745 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 PPM1DO15297 605 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 TP73O15350 636 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 LDLRP01130 860 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 ZNF8P17098 575 aaPredicted RBP11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 FOXN2P32314 431 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 CSTF2P33240 577 aaKnown RBP eCLIP11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 FASLGP48023 281 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 LIMK2P53671 638 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 OR1D5P58170 312 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 PRAMEP78395 509 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 CACNG1Q06432 222 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 ABHD18Q0P651 414 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 TMEM115Q12893 351 aaPredicted RBP11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 GTF2H3Q13889 308 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 AMZ1Q400G9 498 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 ZRANB3Q5FWF4 1079 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 DUPD1Q68J44 220 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 CASC4Q6P4E1 433 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 MICALCLQ6ZW33 695 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 CHST15Q7LFX5 561 aaPredicted RBP11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 AGGF1Q8N302 714 aaeCLIP11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 NXPE1Q8N323 547 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 AGBL5Q8NDL9 886 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 PRR7Q8TB68 274 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 PATE1Q8WXA2 126 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 STARD8Q92502 1023 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 HDAC10Q969S8 669 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 MFSD3Q96ES6 412 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 SGSM3Q96HU1 749 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 SIGLEC10Q96LC7 697 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 CCDC74BQ96LY2 380 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 DPYSL5Q9BPU6 564 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 NUDT22Q9BRQ3 303 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 ZCCHC2Q9C0B9 1178 aaKnown RBP11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 OR2AG1Q9H205 316 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 DPH5Q9H2P9 285 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 WHRNQ9P202 907 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 ANAPC5Q9UJX4 755 aa11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 PCYT1BQ9Y5K3 369 aaPredicted RBP11.66□□□□□ -0.54
SQSTM1-206ENST00000466342 FAM237BA0A1B0GVD1 139 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 MAGEB16A2A368 324 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 ESPNB1AK53 854 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 GRID2O43424 1007 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 CDK14O94921 469 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 GOT2P00505 430 aaKnown RBP11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 PAMP19021 973 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 ACRV1P26436 265 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 CD1CP29017 333 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 AKT1P31749 480 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 CDKN1CP49918 316 aaPredicted RBP11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 CLCNKAP51800 687 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 GPLD1P80108 840 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 DHX9Q08211 1270 aaKnown RBP11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 CALCOCO2Q13137 446 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 HIF1AQ16665 826 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 DNAJC21Q5F1R6 531 aaKnown RBP11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 FNBP1LQ5T0N5 605 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 ATP1A1-AS1Q5TC04 95 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 CES3Q6UWW8 571 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 TIPARPQ7Z3E1 657 aaKnown RBP11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 TMEM135Q86UB9 458 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 SERPINA9Q86WD7 417 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 UNC5BQ8IZJ1 945 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 PDIK1LQ8N165 341 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 SFRP1Q8N474 314 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 NOA1Q8NC60 698 aaKnown RBP11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 OR4L1Q8NH43 312 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 TTC25Q96NG3 672 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 TEFMQ96QE5 360 aaKnown RBP11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 LRRC1Q9BTT6 524 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 FAM96AQ9H5X1 160 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 OCIAD1Q9NX40 245 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 ZDHHC3Q9NYG2 299 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms