RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PRAF2O60831 178 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 GIMD1P0DJR0 217 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 TPH1P17752 444 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 TNNI3P19429 210 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 LHCGRP22888 699 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 ZNF280BQ86YH2 543 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 DCP2Q8IU60 420 aaKnown RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 DUSP9Q99956 384 aaKnown RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 IQCMA0A1B0GVH7 501 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 HCN1O60741 890 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 XRCC1P18887 633 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-206ENST00000409809 CERS1P27544 350 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 MANFP55145 182 aaKnown RBP12.71□□□□□ -0.37
COL6A3-206ENST00000409809 TXNL4AP83876 142 aaKnown RBP12.71□□□□□ -0.37
COL6A3-206ENST00000409809 RHDQ02161 417 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 CARTPTQ16568 116 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 HACD4Q5VWC8 232 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 OR10H5Q8NGA6 315 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 GTF2IRD1Q9UHL9 959 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 PCYT1BQ9Y5K3 369 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-206ENST00000409809 LRRTM2O43300 516 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 FAXDC2Q96IV6 333 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 PAQR5Q9NXK6 330 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-206ENST00000409809 LOC100130705A0A1B0GUX0 176 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 TGFBIQ15582 683 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 WDSUB1Q8N9V3 476 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 MFSD8Q8NHS3 518 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 BTBD1Q9H0C5 482 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 FER1L4A9Z1Z3 1794 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 MICAL2O94851 1124 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 URODP06132 367 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 DLSTP36957 453 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 CDH11P55287 796 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 XKR6Q5GH73 641 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 OR51D1Q8NGF3 324 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 CD300LFQ8TDQ1 290 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 ING5Q8WYH8 240 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 DUSP16Q9BY84 665 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 SLC17A7Q9P2U7 560 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 COMMD3Q9UBI1 195 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 TTC3P53804 2025 aa12.71□□□□□ -0.37
COL6A3-206ENST00000409809 EFCAB7A8K855 629 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 TLE3Q04726 772 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 SETMARQ53H47 684 aaPredicted RBP12.71□□□□□ -0.38
COL6A3-206ENST00000409809 OR2T5Q6IEZ7 315 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 GHDCQ8N2G8 530 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 C2orf69Q8N8R5 385 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 OR2T29Q8NH02 315 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 SGCDQ92629 289 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 ZFP3Q96NJ6 502 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 NECAB3Q96P71 396 aaPredicted RBP12.71□□□□□ -0.38
COL6A3-206ENST00000409809 ABCC13Q9NSE7 274 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 KIF1AQ12756 1690 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 OXSR1O95747 527 aaPredicted RBP12.71□□□□□ -0.38
COL6A3-206ENST00000409809 LINC00032P0C843 101 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 MAGP20916 626 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 DNASE1P24855 282 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 IDH3AP50213 366 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF436Q9C0F3 470 aaPredicted RBP12.71□□□□□ -0.38
COL6A3-206ENST00000409809 GPATCH2Q9NW75 528 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 INMT-MINDY4F8WBC2 141 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 CLDN9O95484 217 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 PIGGQ5H8A4 983 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 PNCKQ6P2M8 343 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 GDPGP1Q6ZNW5 385 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 GK5Q6ZS86 529 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 BRSK2Q8IWQ3 736 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 SP8Q8IXZ3 490 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 CHIAQ9BZP6 476 aa12.71□□□□□ -0.38
COL6A3-206ENST00000409809 MTIF3Q9H2K0 278 aaKnown RBP12.71□□□□□ -0.38
COL6A3-206ENST00000409809 TUBP50607 506 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 RASGEF1AQ8N9B8 481 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 OR6J1Q8NGC5 347 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 OR8K3Q8NH51 312 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 SCRN2Q96FV2 425 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 TCF25Q9BQ70 676 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 COLEC11Q9BWP8 271 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 UXTQ9UBK9 157 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 MAGEB17A8MXT2 336 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 H3BSA7 217 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 LPOP22079 712 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 SCML4Q8N228 414 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 SLC44A5Q8NCS7 719 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 PPM1MQ96MI6 270 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF317Q96PQ6 595 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 FUNDC2Q9BWH2 189 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 TOR3AQ9H497 397 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 TBC1D17Q9HA65 648 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 COL20A1Q9P218 1284 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 OAZ3Q9UMX2 235 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 CYB561D2O14569 222 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 EI24O14681 340 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF182P17025 639 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 SNTA1Q13424 505 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 ANKRD22Q5VYY1 191 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 TRMT11Q7Z4G4 463 aaKnown RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 FCAMRQ8WWV6 532 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 CD163L1Q9NR16 1453 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 TEX13CA0A0J9YWL9 993 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 M0R129 80 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms