RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ALDOCP09972 364 aaKnown RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 ELNP15502 786 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 MSH3P20585 1137 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 PPM1FP49593 454 aaPredicted RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 CDH18Q13634 790 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 CCNYL2Q5T2Q4 361 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 NANOGP8Q6NSW7 305 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 FBXL22Q6P050 247 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 KIAA0408Q6ZU52 694 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 ISCA2Q86U28 154 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 TAGAPQ8N103 731 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 C19orf18Q8NEA5 215 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 OR7G1Q8NGA0 311 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 OR52B6Q8NGF0 335 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 EEF1AKMT1Q8WVE0 214 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 PIK3R3Q92569 461 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 PYCR2Q96C36 320 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 CDK5RAP1Q96SZ6 601 aaKnown RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 NANOGQ9H9S0 305 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 OLAHQ9NV23 265 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 IMPAD1Q9NX62 359 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 SLC9A8Q9Y2E8 581 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 TRPV2Q9Y5S1 764 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 OR6C70A6NIJ9 312 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 ACOT8O14734 319 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 PKMP14618 531 aaKnown RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 SLC11A2P49281 568 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 OR2B6P58173 313 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 MOGQ16653 247 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 PUS10Q3MIT2 529 aaKnown RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 POM121L1PQ3SYA9 428 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 CDKN2AIPNLQ96HQ2 116 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 HIPK3Q9H422 1215 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 POLR3BQ9NW08 1133 aaPredicted RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 ARL15Q9NXU5 204 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 SPASTQ9UBP0 616 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 BAIAP2Q9UQB8 552 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 GMPPBQ9Y5P6 360 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 POLR2AP24928 1970 aaKnown RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 A0A0D9SEW6 157 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 H3BUI4 141 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 RPP40O75818 363 aaKnown RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 C1RP00736 705 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 KCNQ1P51787 676 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 TRAP1Q12931 704 aaKnown RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 LRRC73Q5JTD7 316 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 AHSA2Q719I0 299 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 MMAAQ8IVH4 418 aaKnown RBP11.75□□□□□ -0.53
HMGB1-206ENST00000405805 CADM2Q8N3J6 435 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 OR52J3Q8NH60 311 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 ROPN1LQ96C74 230 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 SLC47A1Q96FL8 570 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 TRIM54Q9BYV2 358 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 IGSF5Q9NSI5 407 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 GJD2Q9UKL4 321 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 BOLA1Q9Y3E2 137 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 PCDHB5Q9Y5E4 795 aa11.75□□□□□ -0.53
HMGB1-206ENST00000405805 TRIP11Q15643 1979 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 STAU1O95793 577 aaKnown RBP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 ITGB1P05556 798 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 FAM163BP0C2L3 166 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 COL6A1P12109 1028 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 PBLDP30039 288 aaPredicted RBP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 WEE1P30291 646 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 HTR2BP41595 481 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 COLEC12Q5KU26 742 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 LRRTM3Q86VH5 581 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 SPERTQ8NA61 448 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 LILRB4Q8NHJ6 448 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 HM13Q8TCT9 377 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 ADAMTS10Q9H324 1103 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 ACTR3BQ9P1U1 418 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 LTBP1Q14766 1721 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 AXIN1O15169 862 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 SLC7A4O43246 635 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 SLC6A2P23975 617 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 SOAT1P35610 550 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 GDI2P50395 445 aaKnown RBP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 EPS8Q12929 822 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 ZSWIM7Q19AV6 140 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 BRMS1LQ5PSV4 323 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 LDLRAD1Q5T700 205 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 PXDC1Q5TGL8 231 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 VASH1Q7L8A9 365 aaPredicted RBP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 NODALQ96S42 347 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 CCM2LQ9NUG4 571 aaPredicted RBP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 DNAJC11Q9NVH1 559 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 C3orf18Q9UK00 162 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 PDE10AQ9Y233 779 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 USP3Q9Y6I4 520 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 A0A0G2JPF8 293 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 PNMA8CA0A1B0GUJ8 204 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 BBIP1A8MTZ0 92 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 HNRNPCL3B7ZW38 293 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 ANGPTL1O95841 491 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 GPIP06744 558 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 HNRNPCL4P0DMR1 293 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 FLT3LGP49771 235 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 MLLT6P55198 1093 aaPredicted RBP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 COL9A2Q14055 689 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms