RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 IQCF5A8MTL0 148 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 MFSD11O43934 449 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 GMFGO60234 142 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 NMBRP28336 390 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 PGDP52209 483 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 NKX2-5P52952 324 aaPredicted RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ECM1Q16610 540 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 SCGB2B2Q4G0G5 96 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 CYP2U1Q7Z449 544 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 PAQR7Q86WK9 346 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 KLHL36Q8N4N3 616 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 OR10G2Q8NGC3 310 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF420Q8TAQ5 688 aaPredicted RBP11.68□□□□□ -0.54
SYNPO-202ENST00000394243 CSGALNACT1Q8TDX6 532 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ZSWIM3Q96MP5 696 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF700Q9H0M5 742 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF451Q9Y4E5 1061 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 PCDHB9Q9Y5E1 797 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 ABCA6Q8N139 1617 aa11.68□□□□□ -0.54
SYNPO-202ENST00000394243 CCL15-CCL14A0A0B4J2E2 113 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SMIM30A4D0T7 59 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 CD48P09326 243 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 GPD2P43304 727 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 CCL15Q16663 113 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF536O15090 1300 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 OR2B3O76000 313 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SLITRK5O94991 958 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 CYP3A4P08684 503 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 TGFB3P10600 412 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 PRKACBP22694 351 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 NRG3P56975 720 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 TEAD4Q15561 434 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SNX29P2Q8IUI4 249 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SDR16C5Q8N3Y7 309 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 OR4K2Q8NGD2 314 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SLC13A3Q8WWT9 602 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 RERGQ96A58 199 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 MFSD14AQ96MC6 490 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 COPS8Q99627 209 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 COQ3Q9NZJ6 369 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 AGO1Q9UL18 857 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 CNTN6Q9UQ52 1028 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 RNF6Q9Y252 685 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 RPH3AQ9Y2J0 694 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 ALKQ9UM73 1620 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 URADA6NGE7 173 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 DISC1C4P0D8 188 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 STK16O75716 305 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 AP2A1O95782 977 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 ERP29P30040 261 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 DNAJA1P31689 397 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 RPS3AP61247 264 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 BMT2Q1RMZ1 405 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 KIAA1161Q6NSJ0 714 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 EXOSC8Q96B26 276 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 AHCYL2Q96HN2 611 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 TSNAXQ99598 290 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 LGR4Q9BXB1 951 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 HCN2Q9UL51 889 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 K7EPI3 171 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SCGB1D2O95969 90 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 MRPS5P82675 430 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 AADACL4Q5VUY2 407 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 ANKS1BQ7Z6G8 1248 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 CADM2Q8N3J6 435 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SLC43A3Q8NBI5 491 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SETD6Q8TBK2 473 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 ZDHHC15Q96MV8 337 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 HACL1Q9UJ83 578 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 PTBP2Q9UKA9 531 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 TMEM5Q9Y2B1 443 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SH3PXD2BA1X283 911 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 ENTPD6O75354 484 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 GSTT2P0CG29 244 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 HK1P19367 917 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 XKP51811 444 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 ATXN1P54253 815 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 IRF9Q00978 393 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 MFSD10Q14728 455 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 KLHL26Q53HC5 615 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 RNF180Q86T96 592 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 FERD3LQ96RJ6 166 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 KCTD15Q96SI1 283 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 IKZF4Q9H2S9 585 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 IL1RAPQ9NPH3 570 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 ASF1AQ9Y294 204 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 QSOX1O00391 747 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 MATN1P21941 496 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SHMT1P34896 483 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 RAB39AQ14964 217 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SLC25A52Q3SY17 297 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 TRMT10BQ6PF06 316 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 PIAS4Q8N2W9 510 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 C2orf73Q8N5S3 287 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 OR5T3Q8NGG3 340 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 FAM84AQ96KN4 292 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 B3GNT5Q9BYG0 378 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 SDCBP2Q9H190 292 aa11.67□□□□□ -0.54
SYNPO-202ENST00000394243 POLR2J3Q9H1A7 115 aaKnown RBP11.67□□□□□ -0.54
SYNPO-202ENST00000394243 GBA3Q9H227 469 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms