RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CACNA1FO60840 1977 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 LOC102723996A0A087X1L8 192 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 KANSL1LA0AUZ9 987 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 LNP1A1A4G5 178 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 PLOD2O00469 737 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 SMAD9O15198 467 aaKnown RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 DKC1O60832 514 aaKnown RBP eCLIP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 BCL10O95999 233 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 APOA4P06727 396 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 LIPFP07098 398 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 MCCP23508 829 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 LIG4P49917 911 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 KRT33BQ14525 404 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 KRT79Q5XKE5 535 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 ADALQ6DHV7 355 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 PLPPR4Q7Z2D5 763 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 MINDY1Q8N5J2 469 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 POMGNT2Q8NAT1 580 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 TMEM190Q8WZ59 177 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 PTERQ96BW5 349 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 ZNF653Q96CK0 615 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 ATOH8Q96SQ7 321 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 CDRT15Q96T59 188 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 DDOQ99489 341 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 SLX1AQ9BQ83 275 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 MAGIXQ9H6Y5 334 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 PELI2Q9HAT8 420 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 ZCCHC17Q9NP64 241 aaKnown RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 CCDC177Q9NQR7 707 aaPredicted RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 INTS10Q9NVR2 710 aaKnown RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 CFDP1Q9UEE9 299 aaPredicted RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 DBNLQ9UJU6 430 aaKnown RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 PCDHGA5Q9Y5G8 931 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 FLT1P17948 1338 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 PRAG1Q86YV5 1406 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 A6NL46 340 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 UBE2CO00762 179 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 MAP2K7O14733 419 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 SLC22A2O15244 555 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 PSMD10O75832 226 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 ZNF26P17031 533 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 HOXC8P31273 242 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 CAPZA2P47755 286 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 CXCL9Q07325 125 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 BAATQ14032 418 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 C15orf59Q2T9L4 293 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 MYLK3Q32MK0 819 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 FFAR4Q5NUL3 377 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 LCN10Q6JVE6 187 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 LONP2Q86WA8 852 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 MCEMP1Q8IX19 187 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 MCUQ8NE86 351 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 ZNF473Q8WTR7 871 aaKnown RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 PTPMT1Q8WUK0 201 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 ZNF622Q969S3 477 aaKnown RBP eCLIP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 PGAP3Q96FM1 320 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 PRMT6Q96LA8 375 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 BAG1Q99933 345 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 SEMA3CQ99985 751 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 CCDC106Q9BWC9 280 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 RTN4RQ9BZR6 473 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 RAD21L1Q9H4I0 556 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 SLC38A7Q9NVC3 462 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 PSD3Q9NYI0 1048 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 WDR35Q9P2L0 1181 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 UBA2Q9UBT2 640 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 HACL1Q9UJ83 578 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 ACAD8Q9UKU7 415 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 ZNF148Q9UQR1 794 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 PYGO1Q9Y3Y4 419 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 AHNAKQ09666 5890 aaKnown RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 LOC100509620A0A075B734 347 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 GPR75-ASB3A0A0A6YYF3 556 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 A0A0G2JNG1 304 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 A0A1W2PPI3 338 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 CSPG5O95196 566 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 CAVIN2O95810 425 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 GH2P01242 217 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 IGLV1-44P01699 117 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 TFAP2AP05549 437 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 ABCB1P08183 1280 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 PRLRP16471 622 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 GNAZP19086 355 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 NMBRP28336 390 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 IRX1P78414 480 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 KIR2DS3Q14952 304 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 KIR2DS5Q14953 304 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 KYNUQ16719 465 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 MEP1AQ16819 746 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 ZFP69Q49AA0 526 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 FAM133BQ5BKY9 247 aaKnown RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 C9orf152Q5JTZ5 239 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 C1orf141Q5JVX7 400 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 SPECC1Q5M775 1068 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 ERMARDQ5T6L9 678 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 SH2D5Q6ZV89 423 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 PLEKHM3Q6ZWE6 761 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 LDB1Q86U70 411 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-206ENST00000376646 CEP97Q8IW35 865 aa2.01□□□□□ -2.09
VPS13A-206ENST00000376646 SPEM1Q8N4L4 309 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms