RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CCDC74AQ96AQ1 378 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 DOHHQ9BU89 302 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 REXO4Q9GZR2 422 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ADNPQ9H2P0 1102 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 FKRPQ9H9S5 495 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 NMRAL1Q9HBL8 299 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 SACM1LQ9NTJ5 587 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 MRGBPQ9NV56 204 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 EURLQ9NYK6 297 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 MARK1Q9P0L2 795 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 PRODH2Q9UF12 536 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF318Q5VUA4 2279 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 METTL12A8MUP2 240 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CCNOP22674 350 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 DRG2P55039 364 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CLDN2P57739 230 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 DAOAP59103 153 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 MMRN1Q13201 1228 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 NR6A1Q15406 480 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 FAM26DQ5JW98 314 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 SLC8B1Q6J4K2 584 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 MACC1Q6ZN28 852 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 GDF7Q7Z4P5 450 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 TECPR1Q7Z6L1 1165 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 FAM71DQ8N9W8 422 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 SORCS1Q8WY21 1168 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 PTERQ96BW5 349 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 MAGEB18Q96M61 343 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CYTH2Q99418 400 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 MIPEPQ99797 713 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 TRPV4Q9HBA0 871 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 IARS2Q9NSE4 1012 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF282Q9UDV7 671 aaPredicted RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 PHF11Q9UIL8 331 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 PCDHA13Q9Y5I0 950 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 SETD1AO15047 1707 aaKnown RBP8.25□□□□□ -1.09
HMGB1-203ENST00000341423 GLI3P10071 1580 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 TTC34A8MYJ7 566 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 E7ENX8 843 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 COQ9O75208 318 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 ZBTB11O95625 1053 aaPredicted RBP8.25□□□□□ -1.09
HMGB1-203ENST00000341423 CCR8P51685 355 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 LGALS4P56470 323 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 TAP2Q03519 686 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 DMTNQ08495 405 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 NAE1Q13564 534 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF483Q8TF39 744 aaPredicted RBP8.25□□□□□ -1.09
HMGB1-203ENST00000341423 OR1F2PQ96R84 312 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 MRPL1Q9BYD6 325 aaKnown RBP8.25□□□□□ -1.09
HMGB1-203ENST00000341423 Q9N2J8 555 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 RNF14Q9UBS8 474 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 SEC14L3Q9UDX4 400 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 XPO7Q9UIA9 1087 aaKnown RBP8.25□□□□□ -1.09
HMGB1-203ENST00000341423 SERTM1A2A2V5 107 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 C2orf78A6NCI8 922 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 A6NLC8 198 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 LGALS16A8MUM7 142 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 FTCDNL1E5RQL4 147 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 CCL21O00585 134 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 RASAL1O95294 804 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 VAV1P15498 845 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 EIF2S3P41091 472 aaKnown RBP8.25□□□□□ -1.09
HMGB1-203ENST00000341423 SLC6A11P48066 632 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 TRA2AQ13595 282 aaKnown RBP eCLIP8.25□□□□□ -1.093e-6■■■■□ 20.9
HMGB1-203ENST00000341423 SLC1A5Q15758 541 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 MS4A13Q5J8X5 152 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF470Q6ECI4 717 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF783Q6ZMS7 281 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 L3MBTL4Q8NA19 623 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 OR9K2Q8NGE7 335 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 SLC9A6Q92581 669 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 CTRCQ99895 268 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 MENTQ9BUN1 341 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 TM9SF3Q9HD45 589 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 WHRNQ9P202 907 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 HS3ST3A1Q9Y663 406 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 CCDC163A0A0D9SF12 145 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.25□□□□□ -1.09
HMGB1-203ENST00000341423 RNF31Q96EP0 1072 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 MCMBPQ9BTE3 642 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 NANSQ9NR45 359 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 FKBP7Q9Y680 259 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 MUC6Q6W4X9 2439 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 CCDC160A6NGH7 325 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 WWP2O00308 870 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 LIN7AO14910 233 aaPredicted RBP8.25□□□□□ -1.09
HMGB1-203ENST00000341423 WDR47O94967 919 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 LYNP07948 512 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 VASPP50552 380 aaPredicted RBP8.25□□□□□ -1.09
HMGB1-203ENST00000341423 COPAP53621 1224 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 HTR4Q13639 388 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 NFATC4Q14934 902 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 CCNYL2Q5T2Q4 361 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 AAGABQ6PD74 315 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 SLC46A3Q7Z3Q1 461 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 THAP5Q7Z6K1 395 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.25□□□□□ -1.09
HMGB1-203ENST00000341423 TRPV3Q8NET8 790 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 TMEM234Q8WY98 164 aa8.25□□□□□ -1.09
HMGB1-203ENST00000341423 MAGED1Q9Y5V3 778 aaPredicted RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms