RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 OR2T11Q8NH01 316 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 SOCS4Q8WXH5 440 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 SEPT8Q92599 483 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 PPP1R2P1Q96PQ5 205 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 VAPAQ9P0L0 249 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 LSM7Q9UK45 103 aaKnown RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 OGDHLQ9ULD0 1010 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 TESMINQ9Y4I5 508 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 C16orf96A6NNT2 1141 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 H3BNH8 94 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 RGS14O43566 566 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 KERAO60938 352 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 ATE1O95260 518 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 KRT6AP02538 564 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 APOA1P02647 267 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 KRT6BP04259 564 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 KRT6CP48668 564 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 NAE1Q13564 534 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 BTG3Q14201 252 aaPredicted RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 XKR6Q5GH73 641 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 NHSL2Q5HYW2 709 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 RAB41Q5JT25 222 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 IER5LQ5T953 404 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 NADSYN1Q6IA69 706 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 FAM171BQ6P995 826 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 TRMT11Q7Z4G4 463 aaKnown RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 DTWD1Q8N5C7 304 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 MYO19Q96H55 970 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 SH3GL1Q99961 368 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 WRAP53Q9BUR4 548 aaKnown RBP11.73□□□□□ -0.53
USP1-201ENST00000339950 RNF186Q9NXI6 227 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 COQ6Q9Y2Z9 468 aa11.73□□□□□ -0.53
USP1-201ENST00000339950 A0A0J9YVX5 310 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 MANSC4A6NHS7 340 aaPredicted RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 LRRC37AA6NMS7 1700 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 PTGER1P34995 402 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 CAPGP40121 348 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 MAGEA10P43363 369 aaPredicted RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 GNPDA1P46926 289 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 PRKAG1P54619 331 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 QSER1Q2KHR3 1735 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 RETSATQ6NUM9 610 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 ALPK2Q86TB3 2170 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 ITIH5Q86UX2 942 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 APCDD1Q8J025 514 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 SLC13A3Q8WWT9 602 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 RNF38Q9H0F5 515 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 GMPPBQ9Y5P6 360 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 CFAP20Q9Y6A4 193 aaKnown RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 PTPRFP10586 1907 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 PRAMEF11O60813 436 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 TSC22D2O75157 780 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 STK16O75716 305 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 ADRA1AP35348 466 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 POLD2P49005 469 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 ATP6V0D1P61421 351 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 ACSM2AQ08AH3 577 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 PCBP1Q15365 356 aaKnown RBP eCLIP11.72□□□□□ -0.53
USP1-201ENST00000339950 TMEM236Q5W0B7 351 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 ACSM2BQ68CK6 577 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 VTCN1Q7Z7D3 282 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 LZICQ8WZA0 190 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 KIAA1191Q96A73 305 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 EPB41L1Q9H4G0 881 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 DUS2Q9NX74 493 aaKnown RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 PDP1Q9P0J1 537 aaPredicted RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 A0A1W2PRU2 124 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 ELOVL7A1L3X0 281 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 TMEM88BA6NKF7 163 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 NEDD8-MDP1E9PL57 170 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 OTCP00480 354 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 ATXN1LP0C7T5 689 aaKnown RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 OR1E2P47887 323 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 CST9Q5W186 159 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 PRMT9Q6P2P2 845 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 PAGE2Q7Z2X7 111 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 ZNF467Q7Z7K2 595 aaPredicted RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 SLCO6A1Q86UG4 719 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 RTN4RL1Q86UN2 441 aaPredicted RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 IFNL1Q8IU54 200 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 TBC1D21Q8IYX1 336 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 UMODL1-AS1Q8N2C9 162 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 PTCD2Q8WV60 388 aaKnown RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 ING5Q8WYH8 240 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 MRPS31Q92665 395 aaKnown RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 GPATCH1Q9BRR8 931 aaKnown RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 REXO4Q9GZR2 422 aaKnown RBP11.72□□□□□ -0.53
USP1-201ENST00000339950 OLAHQ9NV23 265 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 IMPAD1Q9NX62 359 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 SLCO3A1Q9UIG8 710 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 SCML2Q9UQR0 700 aa11.72□□□□□ -0.53
USP1-201ENST00000339950 GLYATL1P3A0A0U1RQE8 302 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 CXCR6O00574 342 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 TRIM24O15164 1050 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 KLKB1P03952 638 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 FSHRP23945 695 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 MASP1P48740 699 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 ERVK-8P63133 956 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 BNIP2Q12982 314 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 KCNAB2Q13303 367 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms