RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 WDR47O94967 919 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 RASAL1O95294 804 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 FGF19O95750 216 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 RHOP08100 348 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 BMP4P12644 408 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 RHOQP17081 205 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 LEPRP48357 1165 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 PPP5CP53041 499 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 LIMK2P53671 638 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 NTHL1P78549 312 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 GRSF1Q12849 480 aaKnown RBP eCLIP10.73□□□□□ -0.69
LSM3-201ENST00000306024 TEAD2Q15562 447 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 NCBP2-AS2Q69YL0 99 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 DESI1Q6ICB0 168 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 DENND5AQ6IQ26 1287 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 CHRDL2Q6WN34 429 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 ZYG11AQ6WRX3 759 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 BEND5Q7L4P6 421 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 CADM2Q8N3J6 435 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 OVCA2Q8WZ82 227 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 CLP1Q92989 425 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 PLD4Q96BZ4 506 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 AGAP2Q99490 1192 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 PRRG3Q9BZD7 231 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 EXD2Q9NVH0 621 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 HCFC1R1Q9NWW0 138 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 GMPR2Q9P2T1 348 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 MYO18AQ92614 2054 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 A0A0J9YYE9 177 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 TCRBV3S1A0A5B6 114 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 ZNF195O14628 629 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 CPNE3O75131 537 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 FADS2O95864 444 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 RPL34P49207 117 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 FAM98BQ52LJ0 330 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 PDE12Q6L8Q7 609 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 PIWIL4Q7Z3Z4 852 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.73□□□□□ -0.69
LSM3-201ENST00000306024 CINPQ9BW66 212 aaPredicted RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 USE1Q9NZ43 259 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 EHD3Q9NZN3 535 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 TPRKBQ9Y3C4 175 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 PCDHGA11Q9Y5H2 935 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 HCFC2Q9Y5Z7 792 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 A0A0A0MRY4 1105 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 PNMA8CA0A1B0GUJ8 204 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 BCLAF3A2AJT9 711 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 C12orf71A8MTZ7 269 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 TNFRSF21O75509 655 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 INMTO95050 263 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 INHBBP09529 407 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 CD40LGP29965 261 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 FMO4P31512 558 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 RENBPP51606 427 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 RACK1P63244 317 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 MS4A13Q5J8X5 152 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 RBM48Q5RL73 367 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 MSANTD2Q6P1R3 559 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 SLC41A1Q8IVJ1 513 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 RTL3Q8N8U3 475 aaKnown RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 HJURPQ8NCD3 748 aaPredicted RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 LRRC20Q8TCA0 184 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 SH3RF2Q8TEC5 729 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 SPATA13Q96N96 652 aa10.73□□□□□ -0.69
LSM3-201ENST00000306024 ZFP37Q9Y6Q3 630 aaPredicted RBP10.73□□□□□ -0.69
LSM3-201ENST00000306024 ARPC2O15144 300 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 NOS1APO75052 506 aaPredicted RBP10.72□□□□□ -0.69
LSM3-201ENST00000306024 CASP3P42574 277 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 UGP2Q16851 508 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 LRIT3Q3SXY7 679 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 ATAT1Q5SQI0 421 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 C6orf10Q5SRN2 563 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 ADGRF1Q5T601 910 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 SPRED2Q7Z698 418 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 ST13P5Q8NFI4 369 aaPredicted RBP10.72□□□□□ -0.69
LSM3-201ENST00000306024 ITFG1Q8TB96 612 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 MCOLN3Q8TDD5 553 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 TANKQ92844 425 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 PGAP3Q96FM1 320 aaPredicted RBP10.72□□□□□ -0.69
LSM3-201ENST00000306024 SLC45A3Q96JT2 553 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 TRIM8Q9BZR9 551 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 COQ3Q9NZJ6 369 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 GRID2O43424 1007 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 FAM20BO75063 409 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 JRKO75564 520 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 JUNP05412 331 aaKnown RBP10.72□□□□□ -0.69
LSM3-201ENST00000306024 MIER2Q8N344 545 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 NDNFQ8TB73 568 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 RDH11Q8TC12 318 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 HDAC2Q92769 488 aaKnown RBP10.72□□□□□ -0.69
LSM3-201ENST00000306024 HOPXQ9BPY8 73 aaPredicted RBP10.72□□□□□ -0.69
LSM3-201ENST00000306024 FEM1AQ9BSK4 669 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 RUBCNLQ9H714 662 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 MOCS1Q9NZB8 636 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 MAFFQ9ULX9 164 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 CLDN11O75508 207 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 CNTN5O94779 1100 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 C1RP00736 705 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 HTR2BP41595 481 aa10.72□□□□□ -0.69
LSM3-201ENST00000306024 PGGT1BP53609 377 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms