RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 OR2A25A4D2G3 310 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 M0R082 166 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 TSPAN3O60637 253 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 HPRP00739 348 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 NTRK1P04629 796 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 DNAJB1P25685 340 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 S100A5P33763 92 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 KRT6CP48668 564 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 TIAL1Q01085 375 aaKnown RBP eCLIP13.25□□□□□ -0.29
SKA3-201ENST00000298260 ITKQ08881 620 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 TOP3AQ13472 1001 aaPredicted RBP13.25□□□□□ -0.29
SKA3-201ENST00000298260 PTGR1Q14914 329 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 ZNF544Q6NX49 715 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 GCNT7Q6ZNI0 430 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 NLRP8Q86W28 1048 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 MMP27Q9H306 513 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 MUC13Q9H3R2 512 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 GLOD4Q9HC38 313 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 TMEM30AQ9NV96 361 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 RBM22Q9NW64 420 aaKnown RBP eCLIP13.25□□□□□ -0.295e-6■■□□□ 13.6
SKA3-201ENST00000298260 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.25□□□□□ -0.29
SKA3-201ENST00000298260 GMPPBQ9Y5P6 360 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 M0R129 80 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 CDC7O00311 574 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 OR4F21O95013 312 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 S1PR4O95977 384 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 FGF4P08620 206 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 PIK3CGP48736 1102 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 TGM4P49221 684 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 DAPP51397 102 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 SNX16P57768 344 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 ZNF280AP59817 542 aaPredicted RBP13.25□□□□□ -0.29
SKA3-201ENST00000298260 CREMQ03060 361 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 TSNQ15631 228 aaKnown RBP13.25□□□□□ -0.29
SKA3-201ENST00000298260 C6orf136Q5SQH8 315 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 PNCKQ6P2M8 343 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.25□□□□□ -0.29
SKA3-201ENST00000298260 EID3Q8N140 333 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 OR52B6Q8NGF0 335 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 NETO1Q8TDF5 533 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 DPF3Q92784 378 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 RNF34Q969K3 372 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 TEX13BQ9BXU2 312 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 ROGDIQ9GZN7 287 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 ACTL8Q9H568 366 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 PCDHGB1Q9Y5G3 927 aa13.25□□□□□ -0.29
SKA3-201ENST00000298260 hCG_2039718K7EN88 272 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 AKR7A2O43488 359 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 SERPINA1P01009 418 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 VIPP01282 170 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 SLC10A3P09131 477 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 CYP2C8P10632 490 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 SEMA3AQ14563 771 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 IHHQ14623 411 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 RBBP7Q16576 425 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 C18orf21Q32NC0 220 aaPredicted RBP13.24□□□□□ -0.29
SKA3-201ENST00000298260 KIAA0930Q6ICG6 404 aaPredicted RBP13.24□□□□□ -0.29
SKA3-201ENST00000298260 DNASE1L2Q92874 299 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 SNAPC3Q92966 411 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 NT5C3BQ969T7 300 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 TBATAQ96M53 351 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 PHOX2BQ99453 314 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 DNMT3LQ9UJW3 386 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 ABCG2Q9UNQ0 655 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 RABL2BQ9UNT1 228 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 RNF6Q9Y252 685 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 TPRKBQ9Y3C4 175 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 TBKBP1A7MCY6 615 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 TLL1O43897 1013 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 APOA1P02647 267 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 CSF2P04141 144 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 PGK2P07205 417 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 PAMP19021 973 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 WNT3AP56704 352 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 PRKG2Q13237 762 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 PON2Q15165 354 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 ZNF648Q5T619 568 aaPredicted RBP13.24□□□□□ -0.29
SKA3-201ENST00000298260 PRSS48Q7RTY5 328 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 APPL2Q8NEU8 664 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 CLHC1Q8NHS4 586 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 CCDC120Q96HB5 630 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 TRNT1Q96Q11 434 aaKnown RBP13.24□□□□□ -0.29
SKA3-201ENST00000298260 GPR20Q99678 358 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 UGT2B28Q9BY64 529 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 NARFLQ9H6Q4 476 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 SCN3BQ9NY72 215 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 AAR2Q9Y312 384 aaKnown RBP13.24□□□□□ -0.29
SKA3-201ENST00000298260 POLR3HQ9Y535 204 aaPredicted RBP13.24□□□□□ -0.29
SKA3-201ENST00000298260 ORC6Q9Y5N6 252 aa13.24□□□□□ -0.29
SKA3-201ENST00000298260 A0A1W2PQ72 361 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 SAGE2PA6NJ88 616 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 LOC110117498-PIK3R3F6TDL0 507 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 SMLR1H3BR10 107 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 CXCR6O00574 342 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 PCDHGA12O60330 932 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 KATNA1O75449 491 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 RYKP34925 604 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 CLCN5P51795 746 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 PXDC1Q5TGL8 231 aa13.23□□□□□ -0.29
SKA3-201ENST00000298260 PAMR1Q6UXH9 720 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms