RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PRPS1L1P21108 318 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 RBL1P28749 1068 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 CLK2P49760 499 aaKnown RBP6□□□□□ -1.45
VPS13D-201ENST00000011700 E2F1Q01094 437 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 OCLNQ16625 522 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 IDNKQ5T6J7 187 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 ZNF615Q8N8J6 731 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 SPATA22Q8NHS9 363 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 C1orf216Q8TAB5 229 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 SLC39A3Q9BRY0 314 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 TKTL2Q9H0I9 626 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 ST6GALNAC4Q9H4F1 302 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 TIGARQ9NQ88 270 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 SERINC1Q9NRX5 453 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 ECM29Q5VYK3 1845 aa6□□□□□ -1.45
VPS13D-201ENST00000011700 TCRBV9S1A1TA0A576 114 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 TRAPPC13A5PLN9 417 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 MAGEB17A8MXT2 336 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 H0YAE9 185 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 ATE1O95260 518 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 GJB6O95452 261 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 YBX3P16989 372 aaKnown RBP eCLIP5.99□□□□□ -1.455e-8■■□□□ 14.5
VPS13D-201ENST00000011700 CMPK1P30085 196 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 RAB5BP61020 215 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 CDK10Q15131 360 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 COL28A1Q2UY09 1125 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 FAM47BQ8NA70 645 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 SPPL2BQ8TCT7 592 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 DQX1Q8TE96 717 aaKnown RBP5.99□□□□□ -1.45
VPS13D-201ENST00000011700 SLC44A1Q8WWI5 657 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 HEPHQ9BQS7 1158 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 TLR6Q9Y2C9 796 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 FAM25EA8MYX2 175 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 E7ENX8 843 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 AP2A1O95782 977 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 IFNA2P01563 188 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 SLC2A2P11168 524 aaPredicted RBP5.99□□□□□ -1.45
VPS13D-201ENST00000011700 ZYG11AQ6WRX3 759 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 HPS6Q86YV9 775 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 ATAD1Q8NBU5 361 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 UPF1Q92900 1129 aaKnown RBP eCLIP5.99□□□□□ -1.45
VPS13D-201ENST00000011700 DNAJC18Q9H819 358 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 KCNN3Q9UGI6 736 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 CSN2P05814 226 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 MGAT1P26572 445 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 SUOXP51687 545 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 ABATP80404 500 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 GRIK4Q16099 956 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 LIN52Q52LA3 116 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 PGM2L1Q6PCE3 622 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 DENND1CQ8IV53 801 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 OSBPL7Q9BZF2 842 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 DEFB129Q9H1M3 183 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 ATAD5Q96QE3 1844 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 A0A1B0GUL6 1792 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 EFCAB9A8MZ26 197 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 CENPBD1B2RD01 187 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 FAM189A1O60320 539 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 SLC19A2O60779 497 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 TFEBP19484 476 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 GLRA2P23416 452 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 UQCRC1P31930 480 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 RPIAP49247 311 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 FOXD4Q12950 439 aaPredicted RBP5.99□□□□□ -1.45
VPS13D-201ENST00000011700 GRIK2Q13002 908 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 RAB31Q13636 194 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 GPR33Q49SQ1 333 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 CDKL4Q5MAI5 379 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 HACD4Q5VWC8 232 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 OTOP1Q7RTM1 612 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 PPTC7Q8NI37 304 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 EPS8L1Q8TE68 723 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 TCEAL4Q96EI5 215 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 MAPKAP1Q9BPZ7 522 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 PELOQ9BRX2 385 aaKnown RBP5.99□□□□□ -1.45
VPS13D-201ENST00000011700 USP29Q9HBJ7 922 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 C19orf12Q9NSK7 152 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 M0R233 179 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 MAGEA3P43357 314 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 CXCR3P49682 368 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 RPP30P78346 268 aaKnown RBP5.99□□□□□ -1.45
VPS13D-201ENST00000011700 PPP2R2BQ00005 443 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 MPP2Q14168 576 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 ZNF829Q3KNS6 432 aaPredicted RBP5.99□□□□□ -1.45
VPS13D-201ENST00000011700 C4orf46Q504U0 113 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 BRAT1Q6PJG6 821 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 ADGRD1Q6QNK2 874 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 FAM131BQ86XD5 332 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 CPA6Q8N4T0 437 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 CCDC32Q9BV29 185 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 KDM3BQ7LBC6 1761 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 BTBD19C9JJ37 291 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 TGM6O95932 706 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 AMD1P17707 334 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 RALGDSQ12967 914 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 USP4Q13107 963 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 PTGR1Q14914 329 aa5.99□□□□□ -1.45
VPS13D-201ENST00000011700 SF3B4Q15427 424 aaKnown RBP eCLIP5.99□□□□□ -1.453e-7■■■■■ 36.6
VPS13D-201ENST00000011700 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.99□□□□□ -1.45
VPS13D-201ENST00000011700 TMEM110Q86TL2 294 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms