RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 MEN1O00255 615 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 APOC2P02655 101 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 GP1BBP13224 206 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 CDH3P22223 829 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 PTGIRP43119 386 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 ABRQ12979 859 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 ANKRD20A2Q5SQ80 823 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 PLEKHS1Q5SXH7 462 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 ANKRD20A1Q5TYW2 823 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 ANKRD20A3Q5VUR7 823 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 HIST2H2BCQ6DN03 193 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 ITPRIPL1Q6GPH6 555 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 AADACL2Q6P093 401 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 OR1L3Q8NH93 324 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 CCDC110Q8TBZ0 833 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 ACTL9Q8TC94 416 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 ZFPM2Q8WW38 1151 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 LCN9Q8WX39 176 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 THAP4Q8WY91 577 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 LINC00615Q96LM1 132 aaPredicted RBP15.71■□□□□ 0.11
CLN3-246ENST00000636228 SLC25A23Q9BV35 468 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 ING2Q9H160 280 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 TSPY26PQ9H489 355 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 ACSS2Q9NR19 701 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 COLEC10Q9Y6Z7 277 aa15.71■□□□□ 0.11
CLN3-246ENST00000636228 ZNF106Q9H2Y7 1883 aaKnown RBP15.71■□□□□ 0.11
CLN3-246ENST00000636228 PTPN13Q12923 2485 aa15.71■□□□□ 0.1
CLN3-246ENST00000636228 C5orf60A6NFR6 353 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 BTN3A3O00478 584 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 KCNN4O15554 427 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 KLK3P07288 261 aaPredicted RBP15.7■□□□□ 0.1
CLN3-246ENST00000636228 ATXN8OSP0DMR3 200 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 ST6GAL1P15907 406 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 GNLYP22749 145 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 PDHA2P29803 388 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 LMAN1P49257 510 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 PGDP52209 483 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 EIF3EP60228 445 aaKnown RBP15.7■□□□□ 0.1
CLN3-246ENST00000636228 PRKAA1Q13131 559 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 DENND5AQ6IQ26 1287 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 DARS2Q6PI48 645 aaKnown RBP15.7■□□□□ 0.1
CLN3-246ENST00000636228 ENDOVQ8N8Q3 282 aaKnown RBP15.7■□□□□ 0.1
CLN3-246ENST00000636228 TC2NQ8N9U0 490 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 CLIP3Q96DZ5 547 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 PSMG3-AS1Q96PY0 264 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 COPS8Q99627 209 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 SRMSQ9H3Y6 488 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 XKR8Q9H6D3 395 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 LUZP4Q9P127 313 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 POMT2Q9UKY4 750 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 BTRCQ9Y297 605 aa15.7■□□□□ 0.1
CLN3-246ENST00000636228 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.7■□□□□ 0.1
CLN3-246ENST00000636228 NAV2Q8IVL1 2488 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 A6NL46 340 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 AGAP14A8MT82 685 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 TMEM150CB9EJG8 249 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 BTN3A1O00481 513 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 VPS4BO75351 444 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 CRTAMO95727 393 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 RBP3P10745 1247 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 RALBP11234 206 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 ATP1B2P14415 290 aaPredicted RBP15.69■□□□□ 0.1
CLN3-246ENST00000636228 PVRP15151 417 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 PRDX3P30048 256 aaKnown RBP15.69■□□□□ 0.1
CLN3-246ENST00000636228 PREPP48147 710 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 PRKG2Q13237 762 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 PRPSAP1Q14558 356 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 PTCHD3Q3KNS1 767 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 IZUMO3Q5VZ72 239 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 C11orf63Q6NUN7 778 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 ZNF517Q6ZMY9 492 aaPredicted RBP15.69■□□□□ 0.1
CLN3-246ENST00000636228 DSELQ8IZU8 1212 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 NXPE1Q8N323 547 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 ACVR1CQ8NER5 493 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 OR8K5Q8NH50 307 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 CPT1CQ8TCG5 803 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 HM13Q8TCT9 377 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 SEC14L1Q92503 715 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 CPT1BQ92523 772 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 TBL1YQ9BQ87 522 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 CCM2Q9BSQ5 444 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 MFRPQ9BY79 579 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 VPS4AQ9UN37 437 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 SNX7Q9UNH6 387 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 AAR2Q9Y312 384 aaKnown RBP15.69■□□□□ 0.1
CLN3-246ENST00000636228 DUSP10Q9Y6W6 482 aa15.69■□□□□ 0.1
CLN3-246ENST00000636228 DOPEY2Q9Y3R5 2298 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 RCCD1A6NED2 376 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 ZNF185O15231 689 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 CAPN1P07384 714 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 TPH1P17752 444 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 ITGALP20701 1170 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 CTNNA2P26232 953 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 NDUFS1P28331 727 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 MC4RP32245 332 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 RORAP35398 523 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 PRLHRP49683 370 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 ZNF140P52738 457 aaPredicted RBP15.68■□□□□ 0.1
CLN3-246ENST00000636228 ITGA1P56199 1179 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 GSDMDP57764 484 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms