RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 TJP3O95049 919 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 IPO7O95373 1038 aaKnown RBP17.95■□□□□ 0.46
CLN3-241ENST00000635861 GSTM1P09488 218 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 MSL3P1P0C860 447 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 PSMB4P28070 264 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 PTPN4P29074 926 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 GSDMDP57764 484 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 GSTM4Q03013 218 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 MSLNQ13421 630 aaPredicted RBP17.95■□□□□ 0.46
CLN3-241ENST00000635861 SEMA5AQ13591 1074 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 KCNAB1Q14722 419 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 PTPRCAPQ14761 206 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 ZNF517Q6ZMY9 492 aaPredicted RBP17.95■□□□□ 0.46
CLN3-241ENST00000635861 NXPE1Q8N323 547 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 TEX19Q8NA77 164 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 ACVR1CQ8NER5 493 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 ZNF501Q96CX3 271 aaPredicted RBP17.95■□□□□ 0.46
CLN3-241ENST00000635861 SPATA13Q96N96 652 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 SPENQ96T58 3664 aaKnown RBP17.95■□□□□ 0.46
CLN3-241ENST00000635861 COPS8Q99627 209 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 VPS37BQ9H9H4 285 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 RRAGDQ9NQL2 400 aaPredicted RBP17.95■□□□□ 0.46
CLN3-241ENST00000635861 C1GALT1Q9NS00 363 aa17.95■□□□□ 0.46
CLN3-241ENST00000635861 CFAP20Q9Y6A4 193 aaKnown RBP17.95■□□□□ 0.46
CLN3-241ENST00000635861 OR6C74A6NCV1 312 aa17.94■□□□□ 0.46
CLN3-241ENST00000635861 KCNN4O15554 427 aa17.94■□□□□ 0.46
CLN3-241ENST00000635861 SGTAO43765 313 aa17.94■□□□□ 0.46
CLN3-241ENST00000635861 ATP1B2P14415 290 aaPredicted RBP17.94■□□□□ 0.46
CLN3-241ENST00000635861 CD151P48509 253 aa17.94■□□□□ 0.46
CLN3-241ENST00000635861 ZNF140P52738 457 aaPredicted RBP17.94■□□□□ 0.46
CLN3-241ENST00000635861 RWDD2BP57060 319 aa17.94■□□□□ 0.46
CLN3-241ENST00000635861 EIF3EP60228 445 aaKnown RBP17.94■□□□□ 0.46
CLN3-241ENST00000635861 KRT33BQ14525 404 aa17.94■□□□□ 0.46
CLN3-241ENST00000635861 IZUMO3Q5VZ72 239 aa17.94■□□□□ 0.46
CLN3-241ENST00000635861 TMEM126BQ8IUX1 230 aa17.94■□□□□ 0.46
CLN3-241ENST00000635861 RMDN2Q96LZ7 410 aa17.94■□□□□ 0.46
CLN3-241ENST00000635861 TBL1YQ9BQ87 522 aa17.94■□□□□ 0.46
CLN3-241ENST00000635861 POMT2Q9UKY4 750 aa17.94■□□□□ 0.46
CLN3-241ENST00000635861 USP9YO00507 2555 aaPredicted RBP17.93■□□□□ 0.46
CLN3-241ENST00000635861 USP9XQ93008 2570 aaPredicted RBP17.93■□□□□ 0.46
CLN3-241ENST00000635861 IGLV3-16A0A075B6K0 115 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 MACROD2A1Z1Q3 448 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 H7C0S8 307 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 NTRK1P04629 796 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 KLK3P07288 261 aaPredicted RBP17.93■□□□□ 0.46
CLN3-241ENST00000635861 CD97P48960 835 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 KPNA2P52292 529 aaKnown RBP17.93■□□□□ 0.46
CLN3-241ENST00000635861 RPA4Q13156 261 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 UBAP2LQ14157 1087 aaKnown RBP17.93■□□□□ 0.46
CLN3-241ENST00000635861 DUS1LQ6P1R4 473 aaKnown RBP17.93■□□□□ 0.46
CLN3-241ENST00000635861 ZNF449Q6P9G9 518 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 DARS2Q6PI48 645 aaKnown RBP17.93■□□□□ 0.46
CLN3-241ENST00000635861 ASB18Q6ZVZ8 466 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 CFAP206Q8IYR0 622 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 SPDYE1Q8NFV5 336 aaPredicted RBP17.93■□□□□ 0.46
CLN3-241ENST00000635861 OR13C4Q8NGS5 318 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 CPT1BQ92523 772 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 PANX2Q96RD6 677 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 SOHLH2Q9NX45 425 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 TLK1Q9UKI8 766 aa17.93■□□□□ 0.46
CLN3-241ENST00000635861 FARSAQ9Y285 508 aaKnown RBP17.93■□□□□ 0.46
CLN3-241ENST00000635861 TRBV5-4A0A0C4DH59 114 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 CLEC18AA5D8T8 446 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 IFRD1O00458 451 aaPredicted RBP17.92■□□□□ 0.46
CLN3-241ENST00000635861 MAP3K7O43318 606 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 RAB40ALP0C0E4 278 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 ZNF75DP51815 510 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 LAMB3Q13751 1172 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 CLEC18BQ6UXF7 455 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 ATCAYQ86WG3 371 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 TMTC1Q8IUR5 882 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 TTC13Q8NBP0 860 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 CLEC18CQ8NCF0 446 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 MIB2Q96AX9 1013 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 MRFAP1L1Q96HT8 127 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 APOL2Q9BQE5 337 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 TFB2MQ9H5Q4 396 aaKnown RBP17.92■□□□□ 0.46
CLN3-241ENST00000635861 MVB12BQ9H7P6 319 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 C10orf88Q9H8K7 445 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 COG4Q9H9E3 785 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 ZDHHC3Q9NYG2 299 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 PCDHGA9Q9Y5G4 932 aaKnown RBP17.92■□□□□ 0.46
CLN3-241ENST00000635861 EPN1Q9Y6I3 576 aaPredicted RBP17.92■□□□□ 0.46
CLN3-241ENST00000635861 FER1L5A0AVI2 2057 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 ANKRD12Q6UB98 2062 aa17.92■□□□□ 0.46
CLN3-241ENST00000635861 SNRNP200O75643 2136 aaKnown RBP17.91■□□□□ 0.46
CLN3-241ENST00000635861 LDB2O43679 373 aa17.91■□□□□ 0.46
CLN3-241ENST00000635861 CDH3P22223 829 aa17.91■□□□□ 0.46
CLN3-241ENST00000635861 GPR19Q15760 415 aa17.91■□□□□ 0.46
CLN3-241ENST00000635861 DENND5AQ6IQ26 1287 aa17.91■□□□□ 0.46
CLN3-241ENST00000635861 CERS6Q6ZMG9 384 aa17.91■□□□□ 0.46
CLN3-241ENST00000635861 LCN9Q8WX39 176 aa17.91■□□□□ 0.46
CLN3-241ENST00000635861 RNF31Q96EP0 1072 aa17.91■□□□□ 0.46
CLN3-241ENST00000635861 SRMSQ9H3Y6 488 aa17.91■□□□□ 0.46
CLN3-241ENST00000635861 TFR2Q9UP52 801 aa17.91■□□□□ 0.46
CLN3-241ENST00000635861 PCDHGB7Q9Y5F8 929 aa17.91■□□□□ 0.46
CLN3-241ENST00000635861 GOLGA6L9A6NEM1 432 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 QSOX1O00391 747 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 POLBP06746 335 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 POLR2CP19387 275 aaPredicted RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms