RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 WDR37Q9Y2I8 494 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 PCDHB1Q9Y5F3 818 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 PIKFYVEQ9Y2I7 2098 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 OR52A4PA6NMU1 304 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 H3BMM5 538 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 LIN7AO14910 233 aaPredicted RBP17.7■□□□□ 0.42
CLN3-239ENST00000628023 F7P08709 466 aaPredicted RBP17.7■□□□□ 0.42
CLN3-239ENST00000628023 PNLIPP16233 465 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 FASLGP48023 281 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 CARSP49589 748 aaKnown RBP17.7■□□□□ 0.42
CLN3-239ENST00000628023 MPP1Q00013 466 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 TMED2Q15363 201 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 TEX35Q5T0J7 233 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 CEP128Q6ZU80 1094 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 KRT222Q8N1A0 295 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 LILRA3Q8N6C8 439 aaPredicted RBP17.7■□□□□ 0.42
CLN3-239ENST00000628023 SH3KBP1Q96B97 665 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 C12orf66Q96MD2 445 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 P2RY12Q9H244 342 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 SARS2Q9NP81 518 aaKnown RBP17.7■□□□□ 0.42
CLN3-239ENST00000628023 IMP3Q9NV31 184 aaKnown RBP17.7■□□□□ 0.42
CLN3-239ENST00000628023 FBXO5Q9UKT4 447 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 IGSF10Q6WRI0 2623 aa17.7■□□□□ 0.42
CLN3-239ENST00000628023 IQCF5A8MTL0 148 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 E5RI56 91 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 IFRD1O00458 451 aaPredicted RBP17.69■□□□□ 0.42
CLN3-239ENST00000628023 PPM1DO15297 605 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 OPA1O60313 960 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 ESR1P03372 595 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 BRAFP15056 766 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 ALDH4A1P30038 563 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 PREPP48147 710 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 CSE1LP55060 971 aaKnown RBP17.69■□□□□ 0.42
CLN3-239ENST00000628023 RPA4Q13156 261 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 SPIDRQ14159 915 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 KRT33BQ14525 404 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 CLCA4Q14CN2 919 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 CTSL3PQ5NE16 218 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 TRMT10BQ6PF06 316 aaKnown RBP17.69■□□□□ 0.42
CLN3-239ENST00000628023 ZNF761Q86XN6 746 aaPredicted RBP17.69■□□□□ 0.42
CLN3-239ENST00000628023 LRRN4CLQ8ND94 238 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 SNIP1Q8TAD8 396 aaKnown RBP17.69■□□□□ 0.42
CLN3-239ENST00000628023 WDR48Q8TAF3 677 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 LKAAEAR1Q8TD35 194 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 TMEM159Q96B96 161 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 DEPDC7Q96QD5 511 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.69■□□□□ 0.42
CLN3-239ENST00000628023 POT1Q9NUX5 634 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 KCNK4Q9NYG8 393 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 RABGEF1Q9UJ41 708 aa17.69■□□□□ 0.42
CLN3-239ENST00000628023 CFAP20Q9Y6A4 193 aaKnown RBP17.69■□□□□ 0.42
CLN3-239ENST00000628023 BRINP1O60477 761 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 S1PR4O95977 384 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 RPLP0P05388 317 aaKnown RBP17.68■□□□□ 0.42
CLN3-239ENST00000628023 APOA4P06727 396 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 MTHFD1P11586 935 aaKnown RBP17.68■□□□□ 0.42
CLN3-239ENST00000628023 PKMP14618 531 aaKnown RBP17.68■□□□□ 0.42
CLN3-239ENST00000628023 XRCC1P18887 633 aaPredicted RBP17.68■□□□□ 0.42
CLN3-239ENST00000628023 MAGEA4P43358 317 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 MAPK9P45984 424 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 OR1D5P58170 312 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 UBE2IP63279 158 aaKnown RBP17.68■□□□□ 0.42
CLN3-239ENST00000628023 CCL7P80098 99 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 PLOD1Q02809 727 aaPredicted RBP17.68■□□□□ 0.42
CLN3-239ENST00000628023 HSPA14Q0VDF9 509 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 FRG1Q14331 258 aaKnown RBP17.68■□□□□ 0.42
CLN3-239ENST00000628023 RPE65Q16518 533 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 AMZ1Q400G9 498 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 ZNF789Q5FWF6 425 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 NAPRTQ6XQN6 538 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 OTOAQ7RTW8 1153 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 ZNF438Q7Z4V0 828 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 SPRED1Q7Z699 444 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 CNTN4Q8IWV2 1026 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 IFT20Q8IY31 132 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 C2CD4AQ8NCU7 369 aaPredicted RBP17.68■□□□□ 0.42
CLN3-239ENST00000628023 FAM136AQ96C01 138 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 AHCYL2Q96HN2 611 aaKnown RBP17.68■□□□□ 0.42
CLN3-239ENST00000628023 C9orf72Q96LT7 481 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 RMDN2Q96LZ7 410 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 FMO2Q99518 471 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 PLAC1Q9HBJ0 212 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 ZDHHC18Q9NUE0 388 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 ZFATQ9P243 1243 aa17.68■□□□□ 0.42
CLN3-239ENST00000628023 ZNF624Q9P2J8 865 aaPredicted RBP17.68■□□□□ 0.42
CLN3-239ENST00000628023 RP1P56715 2156 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 KPNA5O15131 536 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 TLX3O43711 291 aaPredicted RBP17.67■□□□□ 0.42
CLN3-239ENST00000628023 NIPSNAP2O75323 286 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 CHRM3P20309 590 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 ITPKBP27987 946 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 SSTR1P30872 391 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 CCR7P32248 378 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 SLC19A1P41440 591 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 GPR3P46089 330 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 ADARP55265 1226 aaKnown RBP17.67■□□□□ 0.42
CLN3-239ENST00000628023 MGAT5Q09328 741 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 CBLBQ13191 982 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 CUL1Q13616 776 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 TBC1D25Q3MII6 688 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms