RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RBM12BQ8IXT5 1001 aaKnown RBP16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 ASZ1Q8WWH4 475 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 TMEM159Q96B96 161 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 C9orf72Q96LT7 481 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 RHOXF2Q9BQY4 288 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 SCNM1Q9BWG6 230 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 KCNK4Q9NYG8 393 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 CDYLQ9Y232 598 aa16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 COL27A1Q8IZC6 1860 aaPredicted RBP16.17■□□□□ 0.18
CCDC28A-202ENST00000611852 IGHV1OR21-1A0A087WYE8 117 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 LILRA5A6NI73 299 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 IFRD1O00458 451 aaPredicted RBP16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 TCEA3O75764 348 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 APOA4P06727 396 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 SPINK2P20155 84 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 CSE1LP55060 971 aaKnown RBP16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 GPX6P59796 221 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 MGAT5Q09328 741 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 SPIDRQ14159 915 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 GPR18Q14330 331 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 AMZ1Q400G9 498 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 DUS1LQ6P1R4 473 aaKnown RBP16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 GALNT7Q86SF2 657 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 PDZD3Q86UT5 571 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 SLC22A15Q8IZD6 547 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 CACTIN-AS1Q8N1I8 211 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 DCBLD1Q8N8Z6 715 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 GFM1Q96RP9 751 aaKnown RBP16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 SYNDIG1Q9H7V2 258 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 MTRF1LQ9UGC7 380 aaKnown RBP16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 KLK13Q9UKR3 277 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 CLCA2Q9UQC9 943 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 MED16Q9Y2X0 877 aa16.16■□□□□ 0.18
CCDC28A-202ENST00000611852 FAM149AA5PLN7 773 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 FAM221BA6H8Z2 402 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 D6RAR5 112 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 KPNA5O15131 536 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 SLCO2B1O94956 709 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 AHSGP02765 367 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 GSTA2P09210 222 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 JUPP14923 745 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 CHRM3P20309 590 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 ACADLP28330 430 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 CD1CP29017 333 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 EPHA4P54764 986 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 GPLD1P80108 840 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 SHC2P98077 582 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 CUL1Q13616 776 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 RBM44Q6ZP01 1051 aaKnown RBP16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 C3orf62Q6ZUJ4 267 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 CYS1Q717R9 158 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 OTOAQ7RTW8 1153 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 MARCH9Q86YJ5 346 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 VRK3Q8IV63 474 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 TFGQ92734 400 aaPredicted RBP16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 FAM136AQ96C01 138 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 TBC1D10AQ9BXI6 508 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 CCDC68Q9H2F9 335 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 LRRC4CQ9HCJ2 640 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 LATS2Q9NRM7 1088 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 ZFATQ9P243 1243 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 GALPQ9UBC7 116 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 ATXN7L1Q9ULK2 861 aaPredicted RBP16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 COMMD10Q9Y6G5 202 aa16.15■□□□□ 0.18
CCDC28A-202ENST00000611852 TCRBV9S1A1TA0A576 114 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 CPNE6O95741 557 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 PDX1P52945 283 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 TARDBPQ13148 414 aaKnown RBP eCLIP16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 SQSTM1Q13501 440 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 TMED2Q15363 201 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 NKAIN2Q5VXU1 208 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 USP53Q70EK8 1073 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 TMPRSS9Q7Z410 1059 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 IFT20Q8IY31 132 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 OR10G6Q8NH81 332 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 ZFPM2Q8WW38 1151 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 KCNJ9Q92806 393 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 DEPDC7Q96QD5 511 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 FMO2Q99518 471 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 AARSD1Q9BTE6 412 aaKnown RBP16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 TSPYL1Q9H0U9 437 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 KIR3DX1Q9H7L2 352 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 RDH14Q9HBH5 336 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 SMYD2Q9NRG4 433 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 NEUROG3Q9Y4Z2 214 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 HEBP2Q9Y5Z4 205 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 PSAT1Q9Y617 370 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 COLEC10Q9Y6Z7 277 aa16.14■□□□□ 0.18
CCDC28A-202ENST00000611852 E5RI56 91 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 NDUFS1P28331 727 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 ABCG1P45844 678 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 CLCN7P51798 805 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 CFHR1Q03591 330 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 CLPPQ16740 277 aaPredicted RBP16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 ISXQ2M1V0 245 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 PLEKHS1Q5SXH7 462 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 CEP128Q6ZU80 1094 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 RELL1Q8IUW5 271 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 PHC3Q8NDX5 983 aa16.14■□□□□ 0.17
CCDC28A-202ENST00000611852 NUDT22Q9BRQ3 303 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms