RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ARHGAP25P42331 645 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 GNAQP50148 359 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ZNF132P52740 706 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ZNF134P52741 427 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 HK3P52790 923 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 NR1H2P55055 460 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 VAMP2P63027 116 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 NKX6-1P78426 367 aaPredicted RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 SLC7A9P82251 487 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 EIF3IQ13347 325 aaKnown RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 TRPC3Q13507 836 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 DAZAP2Q15038 168 aaPredicted RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ADCK5Q3MIX3 580 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 MIDNQ504T8 468 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 XKR4Q5GH76 650 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ANKRD45Q5TZF3 282 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 FAM205BPQ63HN1 556 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ALKAL1Q6UXT8 129 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 BEND5Q7L4P6 421 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 WDR53Q7Z5U6 358 aaPredicted RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 MOGAT3Q86VF5 341 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 PDSS2Q86YH6 399 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ZBTB8OSQ8IWT0 167 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 PNLDC1Q8NA58 520 aaKnown RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 OR2T3Q8NH03 318 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 PRSS3P2Q8NHM4 247 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ADAMTS15Q8TE58 950 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 C2orf15Q8WU43 125 aaKnown RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 VMP1Q96GC9 406 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 TIGD1Q96MW7 591 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 C7orf26Q96N11 449 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 XPO6Q96QU8 1125 aaKnown RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 CCDC94Q9BW85 323 aaPredicted RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 POLR3FQ9H1D9 316 aaPredicted RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 USP29Q9HBJ7 922 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 SGK2Q9HBY8 427 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 SERHLQ9NQF3 203 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 SPHK2Q9NRA0 654 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 GJB4Q9NTQ9 266 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 KIF17Q9P2E2 1029 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 WRAP73Q9P2S5 460 aaPredicted RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 NFKBIL1Q9UBC1 381 aaPredicted RBP4.4□□□□□ -1.71
LINC00540-201ENST00000611481 TUBGCP4Q9UGJ1 667 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 LOXL2Q9Y4K0 774 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 PTPRJQ12913 1337 aa4.4□□□□□ -1.71
LINC00540-201ENST00000611481 ABCA4P78363 2273 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 TDRD6O60522 2096 aaKnown RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 RNF212BA8MTL3 300 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 PRR23D1E9PI22 279 aaPredicted RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 H0YIZ8 118 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 SOCS2O14508 198 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 DKC1O60832 514 aaKnown RBP eCLIP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 ZG16O60844 167 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 NEBLO76041 1014 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 SORBS2O94875 1100 aaKnown RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 PRR23D2P0DMB1 279 aaPredicted RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 MBL2P11226 248 aaPredicted RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 BRAFP15056 766 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 SSTR2P30874 369 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 CIITAP33076 1130 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 ETV5P41161 510 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 AARSP49588 968 aaKnown RBP eCLIP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 CLK1P49759 484 aaKnown RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 DRG2P55039 364 aaKnown RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 CDH8P55286 799 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 EEFSECP57772 596 aaKnown RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 CDC20Q12834 499 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 IL10RAQ13651 578 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 DRAP1Q14919 205 aaPredicted RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 IMMTQ16891 758 aaKnown RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 FAM187BQ17R55 369 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 TTC31Q49AM3 519 aaPredicted RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 KLHDC7AQ5VTJ3 777 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 NCEH1Q6PIU2 408 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 ENOSF1Q7L5Y1 443 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 OTUD6AQ7L8S5 288 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 SNX32Q86XE0 403 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 RAB11FIP4Q86YS3 637 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 BBS7Q8IWZ6 715 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 ADGRF2Q8IZF7 708 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 C3orf20Q8ND61 904 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 PSD4Q8NDX1 1056 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 GANCQ8TET4 914 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 HTRA1Q92743 480 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 GTF3C6Q969F1 213 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 MRGPRX4Q96LA9 322 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 SMR3AQ99954 134 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 STRADBQ9C0K7 418 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 TTC12Q9H892 705 aaPredicted RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 ARGLU1Q9NWB6 273 aaPredicted RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 ETAA1Q9NY74 926 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 NLGN3Q9NZ94 848 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 THAP10Q9P2Z0 257 aaPredicted RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 COPG2Q9UBF2 871 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 GIMAP2Q9UG22 337 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 RPH3AQ9Y2J0 694 aaPredicted RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 NSD1Q96L73 2696 aaPredicted RBP4.39□□□□□ -1.71
LINC00540-201ENST00000611481 TTC41PQ6P2S7 1318 aa4.39□□□□□ -1.71
LINC00540-201ENST00000611481 A0A1W2PPH5 198 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 ANKUB1A6NFN9 424 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms