RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PHBP35232 272 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 HSPA14Q0VDF9 509 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 TMED2Q15363 201 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 FAM153CQ494X1 144 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 PLEKHS1Q5SXH7 462 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 STRA8Q7Z7C7 330 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 TRIM48Q8IWZ4 208 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.91■□□□□ 0.62
UPF1-209ENST00000600310 CXorf40BQ96DE9 158 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 C12orf66Q96MD2 445 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 CCDC3Q9BQI4 270 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 FUT8Q9BYC5 575 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 UCK1Q9HA47 277 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 RABGEF1Q9UJ41 708 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 GOLGA4Q13439 2230 aaKnown RBP18.9■□□□□ 0.62
UPF1-209ENST00000600310 PIKFYVEQ9Y2I7 2098 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 IFRD1O00458 451 aaPredicted RBP18.9■□□□□ 0.62
UPF1-209ENST00000600310 MYBL2P10244 700 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 ACADLP28330 430 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 GPR3P46089 330 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 CLCN7P51798 805 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 CSE1LP55060 971 aaKnown RBP18.9■□□□□ 0.62
UPF1-209ENST00000600310 ILF2Q12905 390 aaKnown RBP18.9■□□□□ 0.62
UPF1-209ENST00000600310 GBX1Q14549 363 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 KBTBD12Q3ZCT8 623 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 CCDC157Q569K6 752 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 CCNI2Q6ZMN8 369 aaPredicted RBP18.9■□□□□ 0.62
UPF1-209ENST00000600310 PDZD3Q86UT5 571 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 ZC3HC1Q86WB0 502 aaKnown RBP18.9■□□□□ 0.62
UPF1-209ENST00000600310 VRK3Q8IV63 474 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 GSPT2Q8IYD1 628 aaKnown RBP18.9■□□□□ 0.62
UPF1-209ENST00000600310 SLC22A15Q8IZD6 547 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 NDNQ99608 321 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 CPNE1Q99829 537 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 MCMBPQ9BTE3 642 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 TXLNGYQ9BZA5 131 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 SLC40A1Q9NP59 571 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 IMP3Q9NV31 184 aaKnown RBP18.9■□□□□ 0.62
UPF1-209ENST00000600310 GALPQ9UBC7 116 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 HEBP2Q9Y5Z4 205 aa18.9■□□□□ 0.62
UPF1-209ENST00000600310 VPS26AO75436 327 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 ACSL3O95573 720 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 CD9P21926 228 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 GP5P40197 560 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 ABCG1P45844 678 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 NAB1Q13506 487 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 RBM20Q5T481 1227 aaKnown RBP18.89■□□□□ 0.61
UPF1-209ENST00000600310 UBAP2Q5T6F2 1119 aaKnown RBP18.89■□□□□ 0.61
UPF1-209ENST00000600310 TMEM26Q6ZUK4 368 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 TRMT10CQ7L0Y3 403 aaKnown RBP18.89■□□□□ 0.61
UPF1-209ENST00000600310 CTAGE3PQ8IX95 158 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 RBM12BQ8IXT5 1001 aaKnown RBP18.89■□□□□ 0.61
UPF1-209ENST00000600310 ZBTB2Q8N680 514 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 ZFPM2Q8WW38 1151 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 ADAMTS14Q8WXS8 1223 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 TFGQ92734 400 aaPredicted RBP18.89■□□□□ 0.61
UPF1-209ENST00000600310 FAM136AQ96C01 138 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 SLC38A3Q99624 504 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.89■□□□□ 0.61
UPF1-209ENST00000600310 RHOJQ9H4E5 214 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 TXNDC16Q9P2K2 825 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 DHRS7Q9Y394 339 aa18.89■□□□□ 0.61
UPF1-209ENST00000600310 CFAP20Q9Y6A4 193 aaKnown RBP18.89■□□□□ 0.61
UPF1-209ENST00000600310 PRAMEF33A0A0G2JMD5 474 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 ZW10O43264 779 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 B4GAT1O43505 415 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 OPA1O60313 960 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 NDUFS1P28331 727 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 ATP5DP30049 168 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 PMS2P54278 862 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 TIAL1Q01085 375 aaKnown RBP eCLIP18.88■□□□□ 0.61
UPF1-209ENST00000600310 ERCC6LQ2NKX8 1250 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 TTLL9Q3SXZ7 439 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 N4BP2L1Q5TBK1 243 aaPredicted RBP18.88■□□□□ 0.61
UPF1-209ENST00000600310 HECTD2Q5U5R9 776 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 FAM45BPQ6NSW5 357 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 UGT3A1Q6NUS8 523 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 DUS1LQ6P1R4 473 aaKnown RBP18.88■□□□□ 0.61
UPF1-209ENST00000600310 DHRS13Q6UX07 377 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 SPRED1Q7Z699 444 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 ZNF761Q86XN6 746 aaPredicted RBP18.88■□□□□ 0.61
UPF1-209ENST00000600310 PPM1NQ8N819 430 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 GPATCH11Q8N954 259 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 Q8N9G6 341 aaPredicted RBP18.88■□□□□ 0.61
UPF1-209ENST00000600310 GIMAP7Q8NHV1 300 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 FAM45AQ8TCE6 357 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 INPP5DQ92835 1189 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 GPR21Q99679 349 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 SLC30A3Q99726 388 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 ACSS3Q9H6R3 686 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 TAS2R13Q9NYV9 303 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.88■□□□□ 0.616e-7■■■■■ 32.1
UPF1-209ENST00000600310 VWA7Q9Y334 891 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 COLEC10Q9Y6Z7 277 aa18.88■□□□□ 0.61
UPF1-209ENST00000600310 V9GYY5 206 aaPredicted RBP18.88■□□□□ 0.61
UPF1-209ENST00000600310 CNOT1A5YKK6 2376 aaKnown RBP18.87■□□□□ 0.61
UPF1-209ENST00000600310 LILRA5A6NI73 299 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 ALDH4A1P30038 563 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 SKIV2L2P42285 1042 aaKnown RBP18.87■□□□□ 0.61
UPF1-209ENST00000600310 EPHA4P54764 986 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms