RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 SNX24Q9Y343 169 aa10.88□□□□□ -0.67
VRK3-210ENST00000596121 MAD1L1Q9Y6D9 718 aa10.88□□□□□ -0.67
VRK3-210ENST00000596121 RPS6KL1Q9Y6S9 549 aa10.88□□□□□ -0.67
VRK3-210ENST00000596121 AHCTF1Q8WYP5 2266 aa10.88□□□□□ -0.67
VRK3-210ENST00000596121 TMX2-CTNND1H3BSU7 103 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 CAPN5O15484 640 aaPredicted RBP10.87□□□□□ -0.67
VRK3-210ENST00000596121 GPC4O75487 556 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 NDUFS3O75489 264 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 USP1O94782 785 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 FTH1P02794 183 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 OR56A5P0C7T3 313 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 RPS3P23396 243 aaKnown RBP eCLIP10.87□□□□□ -0.67
VRK3-210ENST00000596121 AOAHP28039 575 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 FMO4P31512 558 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 TTPAP49638 278 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 CSE1LP55060 971 aaKnown RBP10.87□□□□□ -0.67
VRK3-210ENST00000596121 RPA4Q13156 261 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 CTBP1Q13363 440 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 BOP1Q14137 746 aaKnown RBP10.87□□□□□ -0.67
VRK3-210ENST00000596121 MORF4L2Q15014 288 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 BBS9Q3SYG4 887 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 AARS2Q5JTZ9 985 aaKnown RBP10.87□□□□□ -0.67
VRK3-210ENST00000596121 ARMC3Q5W041 872 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 ZNF572Q7Z3I7 529 aaPredicted RBP10.87□□□□□ -0.67
VRK3-210ENST00000596121 PDZD3Q86UT5 571 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 CILP2Q8IUL8 1156 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 RBM12BQ8IXT5 1001 aaKnown RBP10.87□□□□□ -0.67
VRK3-210ENST00000596121 AVL9Q8NBF6 648 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 STAMBPL1Q96FJ0 436 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 RUNDC3BQ96NL0 473 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 EBNA1BP2Q99848 306 aaKnown RBP10.87□□□□□ -0.67
VRK3-210ENST00000596121 CARD6Q9BX69 1037 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 STRADBQ9C0K7 418 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 KIR3DX1Q9H7L2 352 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 FOXJ2Q9P0K8 574 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 SAMD15Q9P1V8 674 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 PISDQ9UG56 409 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 ANAPC5Q9UJX4 755 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 FAM169AQ9Y6X4 670 aa10.87□□□□□ -0.67
VRK3-210ENST00000596121 MN1Q10571 1320 aaPredicted RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 EFCAB8A8MWE9 144 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 C9orf172C9J069 976 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 QSOX1O00391 747 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 LIN7AO14910 233 aaPredicted RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 ZW10O43264 779 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 NIPSNAP2O75323 286 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 KRT37O76014 449 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 GSTM1P09488 218 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 AMD1P17707 334 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 PGAM1P18669 254 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 ITPKBP27987 946 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 GABRB3P28472 473 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 EIF2S3P41091 472 aaKnown RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 ELK3P41970 407 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 CAPZBP47756 277 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 CD151P48509 253 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 PPM1FP49593 454 aaPredicted RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 EIF3BP55884 814 aaKnown RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 GSTM4Q03013 218 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 PRKG2Q13237 762 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 EIF3IQ13347 325 aaKnown RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 TRA2AQ13595 282 aaKnown RBP eCLIP10.86□□□□□ -0.67
VRK3-210ENST00000596121 CRYMQ14894 314 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 FASTKD3Q14CZ7 662 aaKnown RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 LONRF1Q17RB8 773 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 DUPD1Q68J44 220 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 ZNF549Q6P9A3 640 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 PCGF5Q86SE9 256 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 CLEC14AQ86T13 490 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 LSMEM2Q8N112 164 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 OTUD6BQ8N6M0 293 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 BMPERQ8N8U9 685 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 OR4E2Q8NGC2 313 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 OR5AR1Q8NGP9 310 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 SNIP1Q8TAD8 396 aaKnown RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 ZFPM2Q8WW38 1151 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 TFGQ92734 400 aaPredicted RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 FGF11Q92914 225 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 USP7Q93009 1102 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 SNF8Q96H20 258 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 C9orf72Q96LT7 481 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 PPM1MQ96MI6 270 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 ZNF578Q96N58 590 aaPredicted RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 TGM7Q96PF1 710 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 FERD3LQ96RJ6 166 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 TTC1Q99614 292 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 DPYSL5Q9BPU6 564 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 ERP44Q9BS26 406 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 DPH5Q9H2P9 285 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 EPB41L1Q9H4G0 881 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 XKR8Q9H6D3 395 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 VPS37BQ9H9H4 285 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 FBXO6Q9NRD1 293 aaPredicted RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 C20orf96Q9NUD7 363 aaPredicted RBP10.86□□□□□ -0.67
VRK3-210ENST00000596121 GRHL1Q9NZI5 618 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 SLC17A6Q9P2U8 582 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 CDC23Q9UJX2 597 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 CRYL1Q9Y2S2 319 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 MED16Q9Y2X0 877 aa10.86□□□□□ -0.67
VRK3-210ENST00000596121 UBA6A0AVT1 1052 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms