RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ARHGEF17Q96PE2 2063 aaPredicted RBP14.67□□□□□ -0.06
UPF1-202ENST00000594243 PRAMEF33A0A0G2JMD5 474 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 SLC5A10A0PJK1 596 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 PLD2O14939 933 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 HGSO14964 777 aaPredicted RBP14.67□□□□□ -0.06
UPF1-202ENST00000594243 ESR1P03372 595 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 CAPNS1P04632 268 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 APOA4P06727 396 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 RBMS1P29558 406 aaKnown RBP14.67□□□□□ -0.06
UPF1-202ENST00000594243 PDHA2P29803 388 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 FMO4P31512 558 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 CCR7P32248 378 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 MRPS25P82663 173 aaKnown RBP14.67□□□□□ -0.06
UPF1-202ENST00000594243 BOP1Q14137 746 aaKnown RBP14.67□□□□□ -0.06
UPF1-202ENST00000594243 BRD3Q15059 726 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 PLCL1Q15111 1095 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 MSS51Q4VC12 460 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 FOXR1Q6PIV2 292 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 IGF2-ASQ6U949 168 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 FBXO39Q8N4B4 442 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 ZCCHC14Q8WYQ9 949 aaKnown RBP14.67□□□□□ -0.06
UPF1-202ENST00000594243 TFGQ92734 400 aaPredicted RBP14.67□□□□□ -0.06
UPF1-202ENST00000594243 RMDN2Q96LZ7 410 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 FAM167BQ9BTA0 163 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 RAB33BQ9H082 229 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 DPH5Q9H2P9 285 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 KIR3DX1Q9H7L2 352 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 MVB12BQ9H7P6 319 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 PDP2Q9P2J9 529 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 CRYL1Q9Y2S2 319 aa14.67□□□□□ -0.06
UPF1-202ENST00000594243 COL27A1Q8IZC6 1860 aaPredicted RBP14.66□□□□□ -0.06
UPF1-202ENST00000594243 IQCF5A8MTL0 148 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 KRT37O76014 449 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 DXOO77932 396 aaKnown RBP14.66□□□□□ -0.06
UPF1-202ENST00000594243 JMJD7P0C870 316 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 THRAP10827 490 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 TYRP1P17643 537 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 ITGB6P18564 788 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 AOAHP28039 575 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 CSF2RBP32927 897 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 ELK3P41970 407 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 MLLT3P42568 568 aaPredicted RBP14.66□□□□□ -0.06
UPF1-202ENST00000594243 PREPP48147 710 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 EIF3BP55884 814 aaKnown RBP14.66□□□□□ -0.06
UPF1-202ENST00000594243 CAV1Q03135 178 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 HSPA14Q0VDF9 509 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 CBLBQ13191 982 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 CRYMQ14894 314 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 TMED2Q15363 201 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 HSP90AA5PQ58FG0 334 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 DUPD1Q68J44 220 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 ZNF470Q6ECI4 717 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 CENPUQ71F23 418 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 PDZD3Q86UT5 571 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 KCNMB4Q86W47 210 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 MNS1Q8NEH6 495 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 ACVR1CQ8NER5 493 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 LPGAT1Q92604 370 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 ZDHHC12Q96GR4 267 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 CCDC74BQ96LY2 380 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 SLC46A1Q96NT5 459 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 BIRC8Q96P09 236 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 IL1RAPL1Q9NZN1 696 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 OGFRQ9NZT2 677 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 ZC3H7BQ9UGR2 993 aaKnown RBP14.66□□□□□ -0.06
UPF1-202ENST00000594243 SLC24A2Q9UI40 661 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 TEX264Q9Y6I9 313 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 CFAP47Q6ZTR5 3102 aa14.66□□□□□ -0.06
UPF1-202ENST00000594243 TP73O15350 636 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 TOX3O15405 576 aaPredicted RBP14.65□□□□□ -0.06
UPF1-202ENST00000594243 BRINP1O60477 761 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 GPC4O75487 556 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 BANF1O75531 89 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 S1PR4O95977 384 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 MPSTP25325 297 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 CSTF2P33240 577 aaKnown RBP eCLIP14.65□□□□□ -0.06
UPF1-202ENST00000594243 ERVPABLB-1P60509 514 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 PDIA2Q13087 525 aaKnown RBP14.65□□□□□ -0.06
UPF1-202ENST00000594243 CTBP1Q13363 440 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 HP1BP3Q5SSJ5 553 aaPredicted RBP14.65□□□□□ -0.06
UPF1-202ENST00000594243 C8orf74Q6P047 294 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 DUS1LQ6P1R4 473 aaKnown RBP14.65□□□□□ -0.06
UPF1-202ENST00000594243 NAPRTQ6XQN6 538 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 OTOAQ7RTW8 1153 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 IGDCC3Q8IVU1 814 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 DENND6AQ8IWF6 608 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 KRT222Q8N1A0 295 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 AGBL5Q8NDL9 886 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 RCBTB1Q8NDN9 531 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 PHC3Q8NDX5 983 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 GSDMBQ8TAX9 411 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 PRR11Q96HE9 360 aaPredicted RBP14.65□□□□□ -0.06
UPF1-202ENST00000594243 ZNF578Q96N58 590 aaPredicted RBP14.65□□□□□ -0.06
UPF1-202ENST00000594243 PWWP2AQ96N64 755 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 CCDC68Q9H2F9 335 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 IARS2Q9NSE4 1012 aaKnown RBP14.65□□□□□ -0.06
UPF1-202ENST00000594243 TMEM9Q9P0T7 183 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 EPHA6Q9UF33 1036 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 POLG2Q9UHN1 485 aa14.65□□□□□ -0.06
UPF1-202ENST00000594243 CHMP2BQ9UQN3 213 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms