RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 IRX4P78413 519 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 DLG1Q12959 904 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 NFE2L1Q14494 772 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 TSNQ15631 228 aaKnown RBP12.56□□□□□ -0.4
CLK3-214ENST00000564096 ALG11Q2TAA5 492 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 PLK5Q496M5 336 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 RAB44Q7Z6P3 723 aaPredicted RBP12.56□□□□□ -0.4
CLK3-214ENST00000564096 PDZD3Q86UT5 571 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 HID1Q8IV36 788 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 SLC22A9Q8IVM8 553 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 PHACTR4Q8IZ21 702 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 PPP1R14CQ8TAE6 165 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 MAGEC3Q8TD91 643 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 DENND1AQ8TEH3 1009 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 EXT2Q93063 718 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 GPR78Q96P69 363 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 GSDMCQ9BYG8 508 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 UNKQ9C0B0 810 aaKnown RBP12.56□□□□□ -0.4
CLK3-214ENST00000564096 MLXIPLQ9NP71 852 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 MRPL40Q9NQ50 206 aaKnown RBP12.56□□□□□ -0.4
CLK3-214ENST00000564096 KLC4Q9NSK0 619 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 CPSF2Q9P2I0 782 aaKnown RBP12.56□□□□□ -0.4
CLK3-214ENST00000564096 COPG2Q9UBF2 871 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 APOBEC3BQ9UH17 382 aaKnown RBP12.56□□□□□ -0.4
CLK3-214ENST00000564096 EMCNQ9ULC0 261 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 NUMA1Q14980 2115 aa12.56□□□□□ -0.4
CLK3-214ENST00000564096 BPTFQ12830 3046 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 FAM86C2PA6NEL3 165 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 PDZK1P1A8MUH7 402 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 GALR2O43603 387 aaPredicted RBP12.55□□□□□ -0.4
CLK3-214ENST00000564096 HIST1H2AGP0C0S8 130 aaPredicted RBP12.55□□□□□ -0.4
CLK3-214ENST00000564096 TPBGLP0DKB5 382 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 CTSEP14091 401 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 GFAPP14136 432 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 SLC2A4P14672 509 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 CPA3P15088 417 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 HIST1H2ADP20671 130 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 ATP5F1P24539 256 aaPredicted RBP12.55□□□□□ -0.4
CLK3-214ENST00000564096 MAOBP27338 520 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 GMPRP36959 345 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 HALP42357 657 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 CLCNKAP51800 687 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 PRKAA2P54646 552 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 NXPH1P58417 271 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 FZD2Q14332 565 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 ZNF658BQ4V348 819 aaPredicted RBP12.55□□□□□ -0.4
CLK3-214ENST00000564096 TPRG1LQ5T0D9 272 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 C16orf46Q6P387 395 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 UNC5DQ6UXZ4 953 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 ZYG11AQ6WRX3 759 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 NAPRTQ6XQN6 538 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 UBE2R2Q712K3 238 aaPredicted RBP12.55□□□□□ -0.4
CLK3-214ENST00000564096 RD3Q7Z3Z2 195 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 ISCA2Q86U28 154 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 GPSM1Q86YR5 675 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 ZBTB44Q8NCP5 570 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 RAB3IL1Q8TBN0 382 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 MDM1Q8TC05 714 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 PTERQ96BW5 349 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 ZC3H10Q96K80 434 aaKnown RBP12.55□□□□□ -0.4
CLK3-214ENST00000564096 HIST1H2AHQ96KK5 128 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 HIST1H2AJQ99878 128 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 H2AFJQ9BTM1 129 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 ZNF358Q9NW07 568 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 DNAJC28Q9NX36 388 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 CDYLQ9Y232 598 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 KCNK6Q9Y257 313 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 OARD1Q9Y530 152 aa12.55□□□□□ -0.4
CLK3-214ENST00000564096 ATXN2Q99700 1313 aaKnown RBP12.55□□□□□ -0.4
CLK3-214ENST00000564096 CDC7O00311 574 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 KDM1AO60341 852 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 BPGMP07738 259 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 DHRS4L1P0CG22 281 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 NME1P15531 152 aaKnown RBP12.54□□□□□ -0.4
CLK3-214ENST00000564096 ITPKAP23677 461 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 MDH1P40925 334 aaKnown RBP12.54□□□□□ -0.4
CLK3-214ENST00000564096 ACTR1BP42025 376 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 AP1S2P56377 157 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 ACTR1AP61163 376 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 NFKB2Q00653 900 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 SRSF5Q13243 272 aaKnown RBP12.54□□□□□ -0.4
CLK3-214ENST00000564096 MPP2Q14168 576 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 SIM2Q14190 667 aaPredicted RBP12.54□□□□□ -0.4
CLK3-214ENST00000564096 OR4D1Q15615 310 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 METRNLQ641Q3 311 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 TTC23LQ6PF05 361 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 PRR23BQ6ZRT6 265 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 FAM83HQ6ZRV2 1179 aaPredicted RBP12.54□□□□□ -0.4
CLK3-214ENST00000564096 SYT12Q8IV01 421 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 NUDCD3Q8IVD9 361 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 TCAIMQ8N3R3 496 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 FBXO39Q8N4B4 442 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 RAB42Q8N4Z0 105 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 C1orf216Q8TAB5 229 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 MCOLN3Q8TDD5 553 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 LRRC8CQ8TDW0 803 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 TSACCQ96A04 125 aaPredicted RBP12.54□□□□□ -0.4
CLK3-214ENST00000564096 ATOH8Q96SQ7 321 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 EGFL8Q99944 293 aa12.54□□□□□ -0.4
CLK3-214ENST00000564096 CAPS2Q9BXY5 557 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms