RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 OLFM1Q99784 485 aa21.29■■□□□ 1
SNX1-210ENST00000560260 CPNE1Q99829 537 aa21.29■■□□□ 1
SNX1-210ENST00000560260 RHOJQ9H4E5 214 aa21.29■■□□□ 1
SNX1-210ENST00000560260 LATS2Q9NRM7 1088 aa21.29■■□□□ 1
SNX1-210ENST00000560260 COMMD10Q9Y6G5 202 aa21.29■■□□□ 1
SNX1-210ENST00000560260 CPED1A4D0V7 1026 aa21.29■■□□□ 1
SNX1-210ENST00000560260 E5RI56 91 aa21.29■■□□□ 1
SNX1-210ENST00000560260 PPM1DO15297 605 aa21.29■■□□□ 1
SNX1-210ENST00000560260 ABHD2P08910 425 aa21.29■■□□□ 1
SNX1-210ENST00000560260 MTHFD1P11586 935 aaKnown RBP21.29■■□□□ 1
SNX1-210ENST00000560260 CEACAM1P13688 526 aa21.29■■□□□ 1
SNX1-210ENST00000560260 SDHBP21912 280 aa21.29■■□□□ 1
SNX1-210ENST00000560260 FDXRP22570 491 aa21.29■■□□□ 1
SNX1-210ENST00000560260 ACADLP28330 430 aa21.29■■□□□ 1
SNX1-210ENST00000560260 GP5P40197 560 aa21.29■■□□□ 1
SNX1-210ENST00000560260 FASLGP48023 281 aa21.29■■□□□ 1
SNX1-210ENST00000560260 RPIAP49247 311 aa21.29■■□□□ 1
SNX1-210ENST00000560260 NAB1Q13506 487 aa21.29■■□□□ 1
SNX1-210ENST00000560260 UAP1Q16222 522 aaPredicted RBP21.29■■□□□ 1
SNX1-210ENST00000560260 ACSBG2Q5FVE4 666 aa21.29■■□□□ 1
SNX1-210ENST00000560260 HECTD2Q5U5R9 776 aa21.29■■□□□ 1
SNX1-210ENST00000560260 OTOAQ7RTW8 1153 aa21.29■■□□□ 1
SNX1-210ENST00000560260 ZNF438Q7Z4V0 828 aa21.29■■□□□ 1
SNX1-210ENST00000560260 SLCO6A1Q86UG4 719 aa21.29■■□□□ 1
SNX1-210ENST00000560260 PDZD3Q86UT5 571 aa21.29■■□□□ 1
SNX1-210ENST00000560260 ZNF761Q86XN6 746 aaPredicted RBP21.29■■□□□ 1
SNX1-210ENST00000560260 ZBTB2Q8N680 514 aa21.29■■□□□ 1
SNX1-210ENST00000560260 IFI44Q8TCB0 444 aa21.29■■□□□ 1
SNX1-210ENST00000560260 TMEM159Q96B96 161 aa21.29■■□□□ 1
SNX1-210ENST00000560260 VPS39Q96JC1 886 aa21.29■■□□□ 1
SNX1-210ENST00000560260 C12orf66Q96MD2 445 aa21.29■■□□□ 1
SNX1-210ENST00000560260 RBBP8Q99708 897 aa21.29■■□□□ 1
SNX1-210ENST00000560260 IMP3Q9NV31 184 aaKnown RBP21.29■■□□□ 1
SNX1-210ENST00000560260 NCKIPSDQ9NZQ3 722 aa21.29■■□□□ 1
SNX1-210ENST00000560260 CPNE7Q9UBL6 633 aa21.29■■□□□ 1
SNX1-210ENST00000560260 RAB21Q9UL25 225 aa21.29■■□□□ 1
SNX1-210ENST00000560260 CORO1CQ9ULV4 474 aaPredicted RBP21.29■■□□□ 1
SNX1-210ENST00000560260 FAM95CA0A1B0GW59 222 aa21.28■■□□□ 1
SNX1-210ENST00000560260 OR5K4A6NMS3 321 aa21.28■■□□□ 1
SNX1-210ENST00000560260 SLCO2B1O94956 709 aa21.28■■□□□ 1
SNX1-210ENST00000560260 APOA4P06727 396 aa21.28■■□□□ 1
SNX1-210ENST00000560260 SLC2A4P14672 509 aa21.28■■□□□ 1
SNX1-210ENST00000560260 XRCC1P18887 633 aaPredicted RBP21.28■■□□□ 1
SNX1-210ENST00000560260 HALP42357 657 aa21.28■■□□□ 1
SNX1-210ENST00000560260 TMED2Q15363 201 aa21.28■■□□□ 1
SNX1-210ENST00000560260 PLEKHS1Q5SXH7 462 aa21.28■■□□□ 1
SNX1-210ENST00000560260 ASZ1Q8WWH4 475 aa21.28■■□□□ 1
SNX1-210ENST00000560260 MRRFQ96E11 262 aaKnown RBP21.28■■□□□ 1
SNX1-210ENST00000560260 CYTH2Q99418 400 aa21.28■■□□□ 1
SNX1-210ENST00000560260 LRIT1Q9P2V4 623 aa21.28■■□□□ 1
SNX1-210ENST00000560260 TSR3Q9UJK0 312 aaKnown RBP21.28■■□□□ 1
SNX1-210ENST00000560260 MTO1Q9Y2Z2 717 aaKnown RBP21.28■■□□□ 1
SNX1-210ENST00000560260 DHRS7Q9Y394 339 aa21.28■■□□□ 1
SNX1-210ENST00000560260 ASXL3Q9C0F0 2248 aa21.27■■□□□ 1
SNX1-210ENST00000560260 VPS26AO75436 327 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 DKK1O94907 266 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 GLB1P16278 677 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 DUSP3P51452 185 aaPredicted RBP21.27■□□□□ 0.99
SNX1-210ENST00000560260 LIMK2P53671 638 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 RP1P56715 2156 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 SIM1P81133 766 aaPredicted RBP21.27■□□□□ 0.99
SNX1-210ENST00000560260 HHEXQ03014 270 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 FAM45BPQ6NSW5 357 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 SLC9B2Q86UD5 537 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 COL27A1Q8IZC6 1860 aaPredicted RBP21.27■□□□□ 0.99
SNX1-210ENST00000560260 FAM45AQ8TCE6 357 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 NAT6Q93015 286 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 ELMO2Q96JJ3 720 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 POT1Q9NUX5 634 aa21.27■□□□□ 0.99
SNX1-210ENST00000560260 RUVBL2Q9Y230 463 aaKnown RBP21.27■□□□□ 0.99
SNX1-210ENST00000560260 CNOT1A5YKK6 2376 aaKnown RBP21.26■□□□□ 0.99
SNX1-210ENST00000560260 A0A087WUV0 522 aaPredicted RBP21.26■□□□□ 0.99
SNX1-210ENST00000560260 NUDT21O43809 227 aaKnown RBP21.26■□□□□ 0.99
SNX1-210ENST00000560260 FTH1P19P0C7X4 201 aa21.26■□□□□ 0.99
SNX1-210ENST00000560260 TAS2R39P59534 338 aa21.26■□□□□ 0.99
SNX1-210ENST00000560260 ZNF460Q14592 562 aa21.26■□□□□ 0.99
SNX1-210ENST00000560260 NR1D2Q14995 579 aa21.26■□□□□ 0.99
SNX1-210ENST00000560260 CPNE9Q8IYJ1 553 aa21.26■□□□□ 0.99
SNX1-210ENST00000560260 CXorf40BQ96DE9 158 aa21.26■□□□□ 0.99
SNX1-210ENST00000560260 GPR22Q99680 433 aa21.26■□□□□ 0.99
SNX1-210ENST00000560260 CCDC3Q9BQI4 270 aa21.26■□□□□ 0.99
SNX1-210ENST00000560260 VWA7Q9Y334 891 aa21.26■□□□□ 0.99
SNX1-210ENST00000560260 NFS1Q9Y697 457 aa21.26■□□□□ 0.99
SNX1-210ENST00000560260 KPNA5O15131 536 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 RFPL3O75679 317 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 VIPP01282 170 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 CD9P21926 228 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 MCM3P25205 808 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 GCAP28676 217 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 PLOD1Q02809 727 aaPredicted RBP21.25■□□□□ 0.99
SNX1-210ENST00000560260 SLC29A2Q14542 456 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 PUM1Q14671 1186 aaKnown RBP eCLIP21.25■□□□□ 0.99
SNX1-210ENST00000560260 CCDC157Q569K6 752 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 GRTP1Q5TC63 336 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 TRIM48Q8IWZ4 208 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 PHC3Q8NDX5 983 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 SLC44A1Q8WWI5 657 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 JPH3Q8WXH2 748 aaPredicted RBP21.25■□□□□ 0.99
SNX1-210ENST00000560260 TFGQ92734 400 aaPredicted RBP21.25■□□□□ 0.99
SNX1-210ENST00000560260 INPP5DQ92835 1189 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms