RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 UNC5DQ6UXZ4 953 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 FAM83HQ6ZRV2 1179 aaPredicted RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 EFL1Q7Z2Z2 1120 aaKnown RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 ZC3HC1Q86WB0 502 aaKnown RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 C17orf82Q86X59 251 aaPredicted RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 SLC22A15Q8IZD6 547 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 ARL14Q8N4G2 192 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 LKAAEAR1Q8TD35 194 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 UBLCP1Q8WVY7 318 aaPredicted RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 INPP5DQ92835 1189 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 ATXN7L3BQ96GX2 97 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 ELMO2Q96JJ3 720 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 C12orf66Q96MD2 445 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 NDNQ99608 321 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 SLC38A3Q99624 504 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 GPR21Q99679 349 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 PARD6BQ9BYG5 372 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 EPB41L1Q9H4G0 881 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 PPCSQ9HAB8 311 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 LATS2Q9NRM7 1088 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 CPNE7Q9UBL6 633 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 RAB21Q9UL25 225 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 PSMD13Q9UNM6 376 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 APOBEC2Q9Y235 224 aaKnown RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 PCDHGA1Q9Y5H4 931 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 PSAT1Q9Y617 370 aa9.86□□□□□ -0.83
USP3-216ENST00000559873 ZFC3H1O60293 1989 aaKnown RBP9.86□□□□□ -0.83
USP3-216ENST00000559873 WDR87Q6ZQQ6 2873 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 CPED1A4D0V7 1026 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 EME2A4GXA9 379 aaPredicted RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 PABPN1LA6NDY0 278 aaKnown RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 IQCF5A8MTL0 148 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 GPC4O75487 556 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 FAM153BP0C7A2 387 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 FDXRP22570 491 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 CNTFP26441 200 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 GABRB3P28472 473 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 CCNFP41002 786 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 MSH2P43246 934 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 GPR3P46089 330 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 PPM1FP49593 454 aaPredicted RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 ACADVLP49748 655 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 CLCN7P51798 805 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 EPHA4P54764 986 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 MAZP56270 477 aaKnown RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 UBE2IP63279 158 aaKnown RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 SIM1P81133 766 aaPredicted RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 E2F1Q01094 437 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 POU4F1Q01851 419 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 BRD3Q15059 726 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 PLCL1Q15111 1095 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 RPE65Q16518 533 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 CLPPQ16740 277 aaPredicted RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 FAM153CQ494X1 144 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 ZNF658BQ4V348 819 aaPredicted RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 RBM20Q5T481 1227 aaKnown RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 LGSNQ5TDP6 509 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 KLHL35Q6PF15 583 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 NEK10Q6ZWH5 1172 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 MYO1HQ8N1T3 1032 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 RAB42Q8N4Z0 105 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 SIDT2Q8NBJ9 832 aaKnown RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 IFI44Q8TCB0 444 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 CD200R1Q8TD46 325 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 MAGEC3Q8TD91 643 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 AENQ8WTP8 325 aaKnown RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 ZFPM2Q8WW38 1151 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 PATE1Q8WXA2 126 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 CAVIN3Q969G5 261 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 CCDC74AQ96AQ1 378 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 FAM136AQ96C01 138 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 RMDN2Q96LZ7 410 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 CAMK1GQ96NX5 476 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 PAFAH2Q99487 392 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 GPR22Q99680 433 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 TXLNGYQ9BZA5 131 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 OR52A5Q9H2C5 316 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 TRIT1Q9H3H1 467 aaKnown RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 MVB12BQ9H7P6 319 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 CAAP1Q9H8G2 361 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 UCK1Q9HA47 277 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 POPDC3Q9HBV1 291 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 SYTL2Q9HCH5 934 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 RRAGDQ9NQL2 400 aaPredicted RBP9.85□□□□□ -0.83
USP3-216ENST00000559873 SMYD2Q9NRG4 433 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 DLL3Q9NYJ7 618 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 LRIT1Q9P2V4 623 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 FETUBQ9UGM5 382 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 RABGEF1Q9UJ41 708 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 ASF1AQ9Y294 204 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 VWA7Q9Y334 891 aa9.85□□□□□ -0.83
USP3-216ENST00000559873 FRYLO94915 3013 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 LILRA5A6NI73 299 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 OR52A4PA6NMU1 304 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 CXorf49A8MYA2 514 aaPredicted RBP9.84□□□□□ -0.83
USP3-216ENST00000559873 TM4SF5O14894 197 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 DUX1O43812 170 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 KRT37O76014 449 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 SLCO2B1O94956 709 aa9.84□□□□□ -0.83
USP3-216ENST00000559873 KCNK5O95279 499 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms