RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SCAMP5Q8TAC9 235 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 NTAN1Q96AB6 310 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PCED1BQ96HM7 432 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TXNDC15Q96J42 360 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DMRTB1Q96MA1 342 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SP110Q9HB58 689 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SPC25Q9HBM1 224 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 AMBNQ9NP70 447 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 NT5MQ9NPB1 228 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 C14orf119Q9NWQ9 140 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SMPD4Q9NXE4 827 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 LIMD1Q9UGP4 676 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PDCD11Q14690 1871 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF236Q9UL36 1845 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 A0A096LPI6 279 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ILVBLA1L0T0 632 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 C17orf102A2RUQ5 167 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CCDC162PA2VCL2 907 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PABPN1LA6NDY0 278 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 NOTOA8MTQ0 251 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DSCR3O14972 297 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 NCAM2O15394 837 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 BNIP3LO60238 219 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TBC1D4O60343 1298 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CNMDO75829 334 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 OR4F21O95013 312 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PGLSO95336 258 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ANGPTL1O95841 491 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 MMP2P08253 660 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ALOX5P09917 674 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 UMPSP11172 480 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 C21orf33P30042 268 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PIK3CGP48736 1102 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CLK3P49761 638 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 HK3P52790 923 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 EEFSECP57772 596 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SLC35A2P78381 396 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SLC10A7Q0GE19 358 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TP53BP2Q13625 1128 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 IRF3Q14653 427 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PTGR1Q14914 329 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TAF12Q16514 161 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CCL14Q16627 93 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CARD16Q5EG05 197 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 XKR7Q5GH72 579 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 KDELC1Q6UW63 502 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CCBE1Q6UXH8 406 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CYP2U1Q7Z449 544 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SPATA2LQ8IUW3 424 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 MSRB3Q8IXL7 192 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DEPDC4Q8N2C3 294 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ELMOD1Q8N336 334 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 METTL4Q8N3J2 472 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 FNDC5Q8NAU1 212 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PIK3C3Q8NEB9 887 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 BLOC1S5Q8TDH9 187 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 RORBQ92753 470 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DACH2Q96NX9 599 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 FAM193BQ96PV7 902 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CYP2S1Q96SQ9 504 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 CDK5RAP1Q96SZ6 601 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 VAT1Q99536 393 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TRMOQ9BU70 441 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 C6orf62Q9GZU0 229 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 TNKS2Q9H2K2 1166 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 FBXL12Q9NXK8 326 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SLC25A37Q9NYZ2 338 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ADGRE2Q9UHX3 823 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 OSGIN1Q9UJX0 560 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SNX6Q9UNH7 406 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 AAR2Q9Y312 384 aaKnown RBP4.78□□□□□ -1.64
LIMA1-214ENST00000552783 PKP3Q9Y446 797 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 SNX5Q9Y5X3 404 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 ACTL7AQ9Y615 435 aa4.78□□□□□ -1.64
LIMA1-214ENST00000552783 DOCK1Q14185 1865 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 SYCE1LA8MT33 242 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 SUPT3HB4E1H0 165 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 HHLA1C9JL84 531 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 SLC22A1O15245 554 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 GPR39O43194 453 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 LDB2O43679 373 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 MGEA5O60502 916 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 ECI2O75521 394 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 NDST3O95803 873 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 SNAI1O95863 264 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-214ENST00000552783 PEX11BO96011 259 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 ANXA6P08133 673 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 HAPLN1P10915 354 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-214ENST00000552783 PAMP19021 973 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 PCSK1P29120 753 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 FMO4P31512 558 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 HCAR3P49019 387 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 PSEN2P49810 448 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 CLCN5P51795 746 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 PHC1P78364 1004 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 NFKB2Q00653 900 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 CHRNB3Q05901 458 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 FOXM1Q08050 763 aa4.77□□□□□ -1.65
LIMA1-214ENST00000552783 VAC14Q08AM6 782 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms