RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PEX13Q92968 403 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 SDCCAG3Q96C92 435 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 RHBDF1Q96CC6 855 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 CCDC97Q96F63 343 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 AURKBQ96GD4 344 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 C1orf74Q96LT6 269 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 RDH12Q96NR8 316 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 TRIB3Q96RU7 358 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 BARD1Q99728 777 aaKnown RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 RHNO1Q9BSD3 238 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 BTBD2Q9BX70 525 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 NUSAP1Q9BXS6 441 aaKnown RBP5.34□□□□□ -1.55
LIMA1-212ENST00000552491 SYTL2Q9HCH5 934 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 MAGEE1Q9HCI5 957 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 SLC6A13Q9NSD5 602 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 VNN3Q9NY84 501 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 SLC25A37Q9NYZ2 338 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 SUN2Q9UH99 717 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 DAPK2Q9UIK4 370 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 MAGEL2Q9UJ55 1249 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 TRPM7Q96QT4 1865 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 PLXNA4Q9HCM2 1894 aa5.34□□□□□ -1.55
LIMA1-212ENST00000552491 IGLV3-10A0A075B6K4 115 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 A0A0D9SEW6 157 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 C17orf102A2RUQ5 167 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TTC36A6NLP5 189 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CLDN25C9JDP6 229 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 M0QZQ0 153 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 KPNA4O00629 521 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 STX16O14662 325 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 LSM1O15116 133 aaKnown RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 MITFO75030 526 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 DNAJB5O75953 348 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 PRKD3O94806 890 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CHEK2O96017 543 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 HPRP00739 348 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CST1P01037 141 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CHRNA1P02708 482 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CAPN1P07384 714 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 HMBSP08397 361 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CNPP09543 421 aaKnown RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF865P0CJ78 1059 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 JAK1P23458 1154 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ACVR2AP27037 513 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 HOXD12P35452 270 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TGFBR1P36897 503 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 PIK3CGP48736 1102 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 EIF2B2P49770 351 aaKnown RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF140P52738 457 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TBX4P57082 545 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 EMX1Q04741 257 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CHRNB3Q05901 458 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 RAD51Q06609 339 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 IL10RBQ08334 325 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 EFEMP1Q12805 493 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 SERINC3Q13530 473 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 DNASE1L3Q13609 305 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TRIM16LQ309B1 348 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 INAVAQ3KP66 663 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ADPRMQ3LIE5 342 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ATP6AP1LQ52LC2 224 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 FAM98BQ52LJ0 330 aaKnown RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CTSL3PQ5NE16 218 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TXNDC11Q6PKC3 985 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 CYP20A1Q6UW02 462 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 SPESP1Q6UW49 350 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 DNAJC14Q6Y2X3 702 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 FRA10AC1Q70Z53 315 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 FAM126BQ8IXS8 530 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 MFSD4AQ8N468 514 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TTC9BQ8N6N2 239 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF548Q8NEK5 533 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 FAR1Q8WVX9 515 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 EXOC2Q96KP1 924 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 BTN2A3PQ96KV6 586 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 SERPINB11Q96P15 392 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 FEM1AQ9BSK4 669 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TBCDQ9BTW9 1192 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 HERC2P3Q9BVR0 1158 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ATP13A3Q9H7F0 1226 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 HEBP1Q9NRV9 189 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TAS2R13Q9NYV9 303 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ADGRE2Q9UHX3 823 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TMEFF2Q9UIK5 374 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ITGB1BP2Q9UKP3 347 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 BAG5Q9UL15 447 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TLR6Q9Y2C9 796 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 FNDC3AQ9Y2H6 1198 aaKnown RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 NAALAD2Q9Y3Q0 740 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 POLR3HQ9Y535 204 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-212ENST00000552491 U3KQV3 271 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 LOC100130705A0A1B0GUX0 176 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 HTR3EA5X5Y0 456 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 MYADML2A6NDP7 307 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 ARNTLO00327 626 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 OR7A17O14581 309 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 AQP9O43315 295 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 TSPAN3O60637 253 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 RAMP2O60895 175 aa5.33□□□□□ -1.56
LIMA1-212ENST00000552491 NDUFS2O75306 463 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms