RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ASIC4Q96FT7 647 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 GLT1D1Q96MS3 346 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 RPRD1AQ96P16 312 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 TWNKQ96RR1 684 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SLC29A1Q99808 456 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 FTHL17Q9BXU8 183 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ULBP1Q9BZM6 244 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 DPY30Q9C005 99 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SMARCAD1Q9H4L7 1026 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 DHX33Q9H6R0 707 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ENAMQ9NRM1 1142 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 WWOXQ9NZC7 414 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 DNAJB4Q9UDY4 337 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 TRMT6Q9UJA5 497 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CDH9Q9ULB4 789 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 TBC1D30Q9Y2I9 924 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 TPRKBQ9Y3C4 175 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 GMPPBQ9Y5P6 360 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 COL4A2P08572 1712 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 A0A1B0GTW7 788 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 LCHNA4D1U4 455 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 B4GAT1O43505 415 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 BRINP1O60477 761 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SIX3O95343 332 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 GLP2RO95838 553 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CPEP16870 476 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 HOXB4P17483 251 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 HOXD10P28358 340 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CTSKP43235 329 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ETV4P43268 484 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 PPP3CCP48454 512 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 BCAP31P51572 246 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 BLVRAP53004 296 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 MRPS5P82675 430 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ECT2LQ008S8 904 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 PRKCQQ04759 706 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 LIPEQ05469 1076 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 BST2Q10589 180 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 LAPTM5Q13571 262 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ARHGEF7Q14155 803 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 PPP1R3AQ16821 1122 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ZBED5Q49AG3 693 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 PDZK1Q5T2W1 519 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 DDI2Q5TDH0 399 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 RAP1GAP2Q684P5 730 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF621Q6ZSS3 439 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 AHSA2Q719I0 299 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 WDTC1Q8N5D0 677 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ABCB9Q9NP78 766 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 EMC7Q9NPA0 242 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 THG1LQ9NWX6 298 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SPATA7Q9P0W8 599 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ARHGAP28Q9P2N2 729 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CNOT6Q9ULM6 557 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 COQ4Q9Y3A0 265 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 MYO10Q9HD67 2058 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 BRWD1Q9NSI6 2320 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 IGKV6D-21A0A0A0MT36 114 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 G3V2T6 193 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 STX7O15400 261 aaKnown RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 HTRA2O43464 458 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 TSPAN9O75954 239 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 LRATO95237 230 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 ALDOAP04075 364 aaKnown RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 LTA4HP09960 611 aaKnown RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF286BP0CG31 522 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 FGF3P11487 239 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 TSHRP16473 764 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 EFNA1P20827 205 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 ELK4P28324 431 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 MTHFRP42898 656 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 CHRNA4P43681 627 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 SLC18A1P54219 525 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 GEMP55040 296 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 SRP54P61011 504 aaKnown RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 TNK2Q07912 1038 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 SLC13A2Q13183 592 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 DPYSQ14117 519 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 PCLAFQ15004 111 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF829Q3KNS6 432 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 RABL3Q5HYI8 236 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 COLEC12Q5KU26 742 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 SPOUT1Q5T280 376 aaKnown RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 MBLAC2Q68D91 279 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 DRICH1Q6PGQ1 229 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 RRM2BQ7LG56 351 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 SLC22A16Q86VW1 577 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 C12orf56Q8IXR9 622 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF567Q8N184 647 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 CLIP4Q8N3C7 705 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 CAMKK1Q8N5S9 505 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 C17orf50Q8WW18 174 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 GAB3Q8WWW8 586 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 SEPT8Q92599 483 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 CENPNQ96H22 339 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 PIWIL1Q96J94 861 aaKnown RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF560Q96MR9 790 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 PRICKLE1Q96MT3 831 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-203ENST00000547825 NODALQ96S42 347 aa5.4□□□□□ -1.54
LIMA1-203ENST00000547825 GDF15Q99988 308 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms