RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 FICDQ9BVA6 458 aa15.04■□□□□ -0
CLSTN3-213ENST00000541953 DEF6Q9H4E7 631 aa15.04■□□□□ -0
CLSTN3-213ENST00000541953 FAM96AQ9H5X1 160 aa15.04■□□□□ -0
CLSTN3-213ENST00000541953 LCMT1Q9UIC8 334 aa15.04■□□□□ -0
CLSTN3-213ENST00000541953 POMT2Q9UKY4 750 aa15.04■□□□□ -0
CLSTN3-213ENST00000541953 TCFL5Q9UL49 500 aa15.04■□□□□ -0
CLSTN3-213ENST00000541953 DNMT3AQ9Y6K1 912 aaPredicted RBP15.04■□□□□ -0
CLSTN3-213ENST00000541953 hCG_1818297A0A087WSY0 165 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 ZNF185O15231 689 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 HCRTR1O43613 425 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 KRT86O43790 486 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 TMEM63AO94886 807 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 CTSBP07858 339 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 PRSS56P0CW18 603 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 HLA-DPA1P20036 260 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 MSH3P20585 1137 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 NR2C2P49116 596 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 ATP1A4Q13733 1029 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 ITGA9Q13797 1035 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 INPP5JQ15735 1006 aaPredicted RBP15.03■□□□□ -0
CLSTN3-213ENST00000541953 ZNF658BQ4V348 819 aaPredicted RBP15.03■□□□□ -0
CLSTN3-213ENST00000541953 BCL7AQ4VC05 210 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 SLC6A19Q695T7 634 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 CYB5D1Q6P9G0 228 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 PID1Q7Z2X4 250 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 BPHLQ86WA6 291 aaPredicted RBP15.03■□□□□ -0
CLSTN3-213ENST00000541953 SYTL1Q8IYJ3 562 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 OR8K1Q8NGG5 319 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 SSC4DQ8WTU2 575 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 NHEJ1Q9H9Q4 299 aaPredicted RBP15.03■□□□□ -0
CLSTN3-213ENST00000541953 ABHD10Q9NUJ1 306 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 HACD3Q9P035 362 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 SNX7Q9UNH6 387 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 PKP3Q9Y446 797 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 PIKFYVEQ9Y2I7 2098 aa15.03■□□□□ -0
CLSTN3-213ENST00000541953 SNRNP200O75643 2136 aaKnown RBP15.02■□□□□ -0
CLSTN3-213ENST00000541953 TMEM150CB9EJG8 249 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 BTN3A1O00481 513 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 STX7O15400 261 aaKnown RBP15.02■□□□□ -0
CLSTN3-213ENST00000541953 SPOPO43791 374 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 SRP72O76094 671 aaKnown RBP15.02■□□□□ -0
CLSTN3-213ENST00000541953 SLC35G4P0C7Q5 338 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 ATXN8OSP0DMR3 200 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 ADRA1AP35348 466 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 CDKN1CP49918 316 aaPredicted RBP15.02■□□□□ -0
CLSTN3-213ENST00000541953 TPM4P67936 248 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 LONRF2Q1L5Z9 754 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 ZDHHC20Q5W0Z9 365 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 ZNF385CQ66K41 422 aaPredicted RBP15.02■□□□□ -0
CLSTN3-213ENST00000541953 RHOT2Q8IXI1 618 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 CFAP206Q8IYR0 622 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 KRT35Q92764 455 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 TCTN2Q96GX1 697 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 LRFN5Q96NI6 719 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 ASB8Q9H765 288 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 CASS4Q9NQ75 786 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 LATS2Q9NRM7 1088 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 DDX56Q9NY93 547 aaKnown RBP15.02■□□□□ -0
CLSTN3-213ENST00000541953 RSPH14Q9UHP6 348 aa15.02■□□□□ -0
CLSTN3-213ENST00000541953 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.02■□□□□ -0
CLSTN3-213ENST00000541953 SEC16AO15027 2179 aa15.02□□□□□ -0.01
CLSTN3-213ENST00000541953 GSAPA4D1B5 854 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 CDH3P22223 829 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 RBL1P28749 1068 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 PDHA2P29803 388 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 TMPRSS15P98073 1019 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 PDE1BQ01064 536 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 MPP3Q13368 585 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 TFDP2Q14188 446 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 ZNF787Q6DD87 383 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 TRIM73Q86UV7 250 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 SEC14L1Q92503 715 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 CLIP3Q96DZ5 547 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 LINC00615Q96LM1 132 aaPredicted RBP15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 FAM118BQ9BPY3 351 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 HEMGNQ9BXL5 484 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 NLNQ9BYT8 704 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 GBA3Q9H227 469 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 OR52A5Q9H2C5 316 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 XKR8Q9H6D3 395 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 ACTR5Q9H9F9 607 aaPredicted RBP15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 ACSL5Q9ULC5 683 aa15.01□□□□□ -0.01
CLSTN3-213ENST00000541953 CACNA1DQ01668 2161 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 AGAP14A8MT82 685 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 GOLGA6L19H0YKK7 550 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 H3BMH7 237 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 MFAP3LO75121 409 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 CNOT3O75175 753 aaKnown RBP15□□□□□ -0.01
CLSTN3-213ENST00000541953 CLDN1O95832 211 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 RAB40ALP0C0E4 278 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 PSMB4P28070 264 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 PRDX3P30048 256 aaKnown RBP15□□□□□ -0.01
CLSTN3-213ENST00000541953 SLC1A1P43005 524 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 PREPP48147 710 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 PRLHRP49683 370 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 VAV2P52735 878 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 ZNF140P52738 457 aaPredicted RBP15□□□□□ -0.01
CLSTN3-213ENST00000541953 GSDMDP57764 484 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 NCF4Q15080 339 aa15□□□□□ -0.01
CLSTN3-213ENST00000541953 TCEAL1Q15170 157 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms