RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 GREM1O60565 184 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 ZNF821O75541 412 aaPredicted RBP16.61■□□□□ 0.25
USP28-208ENST00000540438 TNFAIP8O95379 198 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 ZNF7P17097 686 aaPredicted RBP16.61■□□□□ 0.25
USP28-208ENST00000540438 IL10P22301 178 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 HRH2P25021 359 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 TACR1P25103 407 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 C8orf82Q6P1X6 216 aaPredicted RBP16.61■□□□□ 0.25
USP28-208ENST00000540438 LSRQ86X29 649 aaPredicted RBP16.61■□□□□ 0.25
USP28-208ENST00000540438 CHERPQ8IWX8 916 aaKnown RBP16.61■□□□□ 0.25
USP28-208ENST00000540438 DTWD1Q8N5C7 304 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 PDZD8Q8NEN9 1154 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 TSEN34Q9BSV6 310 aaKnown RBP16.61■□□□□ 0.25
USP28-208ENST00000540438 EFHD1Q9BUP0 239 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 P2RY12Q9H244 342 aa16.61■□□□□ 0.25
USP28-208ENST00000540438 TMEM202A6NGA9 273 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 DLGAP1O14490 977 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 TRBC1P01850 177 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 ESR1P03372 595 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 ERVK-8P63133 956 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 RCAN2Q14206 197 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 C5orf22Q49AR2 442 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 CRTC1Q6UUV9 634 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 FATE1Q969F0 183 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 SLC46A2Q9BY10 475 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 SARDHQ9UL12 918 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 PLK4O00444 970 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 DIRAS1O95057 198 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 MLYCDO95822 493 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 TCF3P15923 654 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 FASP25445 335 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 RPL5P46777 297 aaKnown RBP16.6■□□□□ 0.25
USP28-208ENST00000540438 TRAF3Q13114 568 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 PGS1Q32NB8 556 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 SUSD1Q6UWL2 747 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 ERMP1Q7Z2K6 904 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 RGL4Q8IZJ4 473 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 TMEM199Q8N511 208 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 HJURPQ8NCD3 748 aaPredicted RBP16.6■□□□□ 0.25
USP28-208ENST00000540438 NCLNQ969V3 563 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 CHID1Q9BWS9 393 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 OPTCQ9UBM4 332 aa16.6■□□□□ 0.25
USP28-208ENST00000540438 LSM1O15116 133 aaKnown RBP16.59■□□□□ 0.25
USP28-208ENST00000540438 MYCLP1P12525 358 aaPredicted RBP16.59■□□□□ 0.25
USP28-208ENST00000540438 ITGALP20701 1170 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 CCR7P32248 378 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 PRKG2Q13237 762 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 LAMB3Q13751 1172 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 PLEKHG6Q3KR16 790 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 FAM180BQ6P0A1 224 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 GALNT7Q86SF2 657 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 ROPN1LQ96C74 230 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 TCF12Q99081 682 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 NRTNQ99748 197 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 C2orf49Q9BVC5 232 aaPredicted RBP16.59■□□□□ 0.25
USP28-208ENST00000540438 ACTR8Q9H981 624 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 SMURF2Q9HAU4 748 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 DLGAP4Q9Y2H0 992 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 FZD6O60353 706 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 MAN1A2O60476 641 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 PABPC4LP0CB38 370 aaKnown RBP16.59■□□□□ 0.25
USP28-208ENST00000540438 CRY1Q16526 586 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 RETSATQ6NUM9 610 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 TTC33Q6PID6 262 aaPredicted RBP16.59■□□□□ 0.25
USP28-208ENST00000540438 TRIM74Q86UV6 250 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 C2orf73Q8N5S3 287 aaPredicted RBP16.59■□□□□ 0.25
USP28-208ENST00000540438 PFDN4Q9NQP4 134 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 CCM2LQ9NUG4 571 aaPredicted RBP16.59■□□□□ 0.25
USP28-208ENST00000540438 COMMD8Q9NX08 183 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 METAP1P53582 386 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 TNK2Q07912 1038 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 ABRQ12979 859 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 NEDD8Q15843 81 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 XKR7Q5GH72 579 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 ZBTB2Q8N680 514 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 MRPS31Q92665 395 aaKnown RBP16.59■□□□□ 0.25
USP28-208ENST00000540438 ZNF597Q96LX8 424 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 LIMD1Q9UGP4 676 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 ITM2BQ9Y287 266 aa16.59■□□□□ 0.25
USP28-208ENST00000540438 HIDE1A8MVS5 230 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 PFDN6O15212 129 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 HOXA2O43364 376 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 ELK4P28324 431 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 B4GALNT1Q00973 533 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 INPP5AQ14642 412 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 CHST9Q7L1S5 443 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 STK32CQ86UX6 486 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 RMND5BQ96G75 393 aaPredicted RBP16.58■□□□□ 0.24
USP28-208ENST00000540438 HOPXQ9BPY8 73 aaPredicted RBP16.58■□□□□ 0.24
USP28-208ENST00000540438 TMEM175Q9BSA9 504 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 FAM126AQ9BYI3 521 aaPredicted RBP16.58■□□□□ 0.24
USP28-208ENST00000540438 SLC22A14Q9Y267 594 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 RAD51BO15315 384 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 ULK1O75385 1050 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 RPIAP49247 311 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 NKG7Q16617 165 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 NHSL2Q5HYW2 709 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 Q6ZVL8 140 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 MINDY1Q8N5J2 469 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.58■□□□□ 0.242e-7■■■■■ 62.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms