RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 MINDY1Q8N5J2 469 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 CDYL2Q8N8U2 506 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 LPCAT1Q8NF37 534 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 CNIH3Q8TBE1 160 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 CINPQ9BW66 212 aaPredicted RBP12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 ABCG8Q9H221 673 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 RAD21L1Q9H4I0 556 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 MRGBPQ9NV56 204 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 ERGIC3Q9Y282 383 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 GBF1Q92538 1859 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 CCDC154A6NI56 674 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 COCHO43405 550 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 SULT1C4O75897 302 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 MATN4O95460 622 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 TM4SF4P48230 202 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 SLC13A2Q13183 592 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 TAF1AQ15573 450 aaPredicted RBP12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 RAB44Q7Z6P3 723 aaPredicted RBP12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 DBF4BQ8NFT6 615 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 OR13F1Q8NGS4 319 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 RNF38Q9H0F5 515 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 SEPT3Q9UH03 358 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 TET1Q8NFU7 2136 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 CBX4O00257 560 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 KLK8O60259 260 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 NDUFS3O75489 264 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 CLPXO76031 633 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 ALDH2P05091 517 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 JAK1P23458 1154 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 PSMA3P25788 255 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 HPCAL1P37235 193 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 SEPHS1P49903 392 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 RBBP7Q16576 425 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 XKR7Q5GH72 579 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 SPESP1Q6UW49 350 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 SLCO6A1Q86UG4 719 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 FNDC5Q8NAU1 212 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 OR52B6Q8NGF0 335 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 NDNFQ8TB73 568 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 CD200R1Q8TD46 325 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 GLMNQ92990 594 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 ASB2Q96Q27 587 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 TRIM15Q9C019 465 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 NTN4Q9HB63 628 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 CDH7Q9ULB5 785 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 RAI2Q9Y5P3 530 aa12.37□□□□□ -0.43
SFSWAP-208ENST00000539506 AQP12BA6NM10 295 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 BBIP1A8MTZ0 92 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 SNAP91O60641 907 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 ZNF12P17014 697 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 MC4RP32245 332 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 ATP5C1P36542 298 aaKnown RBP12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 MTHFRP42898 656 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 HLCSP50747 726 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 ARF5P84085 180 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 RAD51Q06609 339 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 CTU2Q2VPK5 515 aaKnown RBP12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 ANKS6Q68DC2 871 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 AFTPHQ6ULP2 937 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 SPRED1Q7Z699 444 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 AQP12AQ8IXF9 295 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 SFRP1Q8N474 314 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 HOPXQ9BPY8 73 aaPredicted RBP12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 SYTL2Q9HCH5 934 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 DNMT3LQ9UJW3 386 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 PCDHGA11Q9Y5H2 935 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 ZNF840PA6NDX5 716 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 E2F3O00716 465 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 HS6ST1O60243 411 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 MITFO75030 526 aaPredicted RBP12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 CYBBP04839 570 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 MBL2P11226 248 aaPredicted RBP12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 HSD17B1P14061 328 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 HOXB8P17481 243 aaPredicted RBP12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 ARSFP54793 590 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 CDH4P55283 916 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 DPY19L1Q2PZI1 675 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 CXorf57Q6NSI4 855 aaKnown RBP12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 TXNDC11Q6PKC3 985 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 RBM23Q86U06 439 aaKnown RBP12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 SPARTQ8N0X7 666 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 EFHBQ8N7U6 833 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 CHPT1Q8WUD6 406 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 ZUFSPQ96AP4 578 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 TTLL2Q9BWV7 592 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 SCUBE2Q9NQ36 999 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 RIC8BQ9NVN3 520 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 TUBA8Q9NY65 449 aaPredicted RBP12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 EIF2B4Q9UI10 523 aaKnown RBP12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 BAG5Q9UL15 447 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 AGO1Q9UL18 857 aaKnown RBP12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 PSME2Q9UL46 239 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 VPS4AQ9UN37 437 aa12.36□□□□□ -0.43
SFSWAP-208ENST00000539506 TCRBV5S2A0A599 114 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 ANKRD66B4E2M5 251 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 GALTP07902 379 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 FMO3P31513 532 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 SIM2Q14190 667 aaPredicted RBP12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 SGO1Q5FBB7 561 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms