RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ITFG1Q8TB96 612 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 IFI44Q8TCB0 444 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 MGARPQ8TDB4 240 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 PYROXD1Q8WU10 500 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 SMG7Q92540 1137 aaKnown RBP4.17□□□□□ -1.74
CD44-226ENST00000527889 AZIN2Q96A70 460 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 ZNF707Q96C28 371 aaPredicted RBP4.17□□□□□ -1.74
CD44-226ENST00000527889 PABPC5Q96DU9 382 aaKnown RBP4.17□□□□□ -1.74
CD44-226ENST00000527889 OXNAD1Q96HP4 312 aaPredicted RBP4.17□□□□□ -1.74
CD44-226ENST00000527889 ZSWIM3Q96MP5 696 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 SERPINB12Q96P63 405 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 TSGA13Q96PP4 275 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 IL12RB2Q99665 862 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 SH3GL2Q99962 352 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 APOL2Q9BQE5 337 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 FERMT1Q9BQL6 677 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 SLC39A3Q9BRY0 314 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 MLPHQ9BV36 600 aaPredicted RBP4.17□□□□□ -1.74
CD44-226ENST00000527889 BRD8Q9H0E9 1235 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 MAGEH1Q9H213 219 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 CNTD2Q9H8S5 307 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 TMBIM4Q9HC24 238 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 GLOD4Q9HC38 313 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 NT5MQ9NPB1 228 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 MED4Q9NPJ6 270 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 RBM22Q9NW64 420 aaKnown RBP eCLIP4.17□□□□□ -1.74
CD44-226ENST00000527889 PLK2Q9NYY3 685 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.17□□□□□ -1.74
CD44-226ENST00000527889 DKK3Q9UBP4 350 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 LSM7Q9UK45 103 aaKnown RBP4.17□□□□□ -1.74
CD44-226ENST00000527889 N6AMT1Q9Y5N5 214 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 UNC13CQ8NB66 2214 aa4.17□□□□□ -1.74
CD44-226ENST00000527889 PCDH15Q96QU1 1955 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 SCN3AQ9NY46 2000 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 A0A1B0GVM2 712 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 EXOC1LA0A1B0GW35 172 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CCDC78A2IDD5 438 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 SYNDIG1LA6NDD5 238 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 TCAF2A6NFQ2 919 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 GOLGA6L10A6NI86 522 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 FOXO6A8MYZ6 492 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 GOLGA8KD6RF30 607 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 POC1B-GALNT4F8VUJ3 575 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 RASGRF2O14827 1237 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CASQ2O14958 399 aaPredicted RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 MATN3O15232 486 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 EIF3HO15372 352 aaKnown RBP eCLIP4.16□□□□□ -1.74
CD44-226ENST00000527889 LINC01565O15544 149 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 MTSS1O43312 755 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 SNAP91O60641 907 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 PRAMEF11O60813 436 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 PMPCBO75439 489 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CLDN11O75508 207 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 GJB3O75712 270 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 LUC7L3O95232 432 aaKnown RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 LY86O95711 162 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 AP2A1O95782 977 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 LATS1O95835 1130 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 MT-CYBP00156 380 aaPredicted RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 AGTP01019 485 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 AMY1AP04745 511 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 ABHD2P08910 425 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 HNRNPA1P09651 372 aaKnown RBP eCLIP4.16□□□□□ -1.74
CD44-226ENST00000527889 LTA4HP09960 611 aaKnown RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 NUDT17P0C025 328 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 MYZAPP0CAP1 466 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 GLULP15104 373 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 TPH1P17752 444 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 MGAT1P26572 445 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 HOXD9P28356 352 aaPredicted RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 ADSLP30566 484 aaPredicted RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 TRHRP34981 398 aaPredicted RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 AVPR1AP37288 418 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 MAGEA3P43357 314 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 MMP13P45452 471 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 NDST2P52849 883 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 ARFIP2P53365 341 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CDH4P55283 916 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 YBEYP58557 167 aaPredicted RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 ERVFRD-1P60508 538 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 PRR5P85299 388 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CD83Q01151 205 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 GNA12Q03113 381 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 TFF2Q03403 129 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 CD69Q07108 199 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 NIPAL4Q0D2K0 466 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 SLC10A7Q0GE19 358 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 ZNF177Q13360 481 aaPredicted RBP4.16□□□□□ -1.74
CD44-226ENST00000527889 IHHQ14623 411 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 TMED2Q15363 201 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 DUSP6Q16828 381 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 PARP6Q2NL67 630 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 MST1LQ2TV78 715 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 PARP15Q460N3 678 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 FSCBQ5H9T9 825 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 C3orf38Q5JPI3 329 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 KHDC1LQ5JSQ8 128 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 SPDYCQ5MJ68 293 aa4.16□□□□□ -1.74
CD44-226ENST00000527889 VASNQ6EMK4 673 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms