RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ABCB8Q9NUT2 735 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 FNIP2Q9P278 1114 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 PRKAG2Q9UGJ0 569 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 UTS2RQ9UKP6 389 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 KIAA1551Q9HCM1 1747 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 FAM92AA1XBS5 289 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 LRRC72A6NJI9 287 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 GPX3P22352 226 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 F8A1P23610 371 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 FADDQ13158 208 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 PTPRRQ15256 657 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 TIGD6Q17RP2 521 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 SLC39A4Q6P5W5 647 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 PLET1Q6UQ28 207 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 SLC41A1Q8IVJ1 513 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 CYP4Z2PQ8N1L4 340 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 DNAAF3Q8N9W5 541 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 STYXQ8WUJ0 223 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 KLHL6Q8WZ60 621 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 INTS12Q96CB8 462 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 KLHL15Q96M94 604 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 DUSP21Q9H596 190 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 CATSPERZQ9NTU4 200 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 DCAF16Q9NXF7 216 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 TAS2R7Q9NYW3 318 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 ADAM28Q9UKQ2 775 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 CDH9Q9ULB4 789 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 PCDHGB3Q9Y5G1 929 aa11.87□□□□□ -0.51
LIMCH1-213ENST00000511496 PIPSLA2A3N6 862 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 UBXN8O00124 270 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 PMPCBO75439 489 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 HRH2P25021 359 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 SDC4P31431 198 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 TIE1P35590 1138 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 NRIP1P48552 1158 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 KCNK10P57789 538 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 SCN1BQ07699 218 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 PSMD5Q16401 504 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 SEZ6Q53EL9 994 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 RBM20Q5T481 1227 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 LRFN4Q6PJG9 635 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 KDELC1Q6UW63 502 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 FAM86B1Q8N7N1 296 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 NLGN4YQ8NFZ3 816 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 OR6C4Q8NGE1 309 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 OR8K5Q8NH50 307 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 SETD6Q8TBK2 473 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 CIDECQ96AQ7 238 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 LINC00052Q96N35 136 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 RBM4BQ9BQ04 359 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 RBM4Q9BWF3 364 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 PITHD1Q9GZP4 211 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 ACAD9Q9H845 621 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 HPF1Q9NWY4 346 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 PCDHA9Q9Y5H5 950 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 TP53BP1Q12888 1972 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 A0A096LPI6 279 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 OR2A25A4D2G3 310 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 RPLP0P05388 317 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 C21orf33P30042 268 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 RARRES1P49788 294 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 SMSP52788 366 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 RAB14P61106 215 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 TUSC1Q2TAM9 212 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 TSTD2Q5T7W7 516 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 FAM102AQ5T9C2 384 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 CHMP1BQ7LBR1 199 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 KRT73Q86Y46 540 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 CDKL3Q8IVW4 592 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 OR52K1Q8NGK4 314 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 GPR151Q8TDV0 419 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 RBPMSQ93062 196 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 TUBGCP3Q96CW5 907 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 BFARQ9NZS9 450 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 PCOLCE2Q9UKZ9 415 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 CNTNAP4Q9C0A0 1308 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 HACD1B0YJ81 288 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 GPC1P35052 558 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 MAGEA12P43365 314 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 GDI2P50395 445 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 KPNA2P52292 529 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 DGKQP52824 942 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 GRK1Q15835 563 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 KLHL12Q53G59 568 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 RETSATQ6NUM9 610 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 SNX20Q7Z614 316 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 GPAT4Q86UL3 456 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 RTP4Q96DX8 246 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 AKTIPQ9H8T0 292 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 MEAF6Q9HAF1 191 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 IL1RAPQ9NPH3 570 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 KCNH7Q9NS40 1196 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 KLHL21Q9UJP4 597 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 TMEM5Q9Y2B1 443 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 ACOT9Q9Y305 439 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 PRELID3BQ9Y3B1 194 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 ALG5Q9Y673 324 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 RGPD5Q99666 1765 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 ARAP2Q8WZ64 1704 aa11.86□□□□□ -0.51
LIMCH1-213ENST00000511496 EFCAB10A6NFE3 127 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms